Rroxscaffold_4G00301970

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000047
Physical Location & Seq
Forward (+)
22338751 .. 22341970
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301970.1

Sequence Viewer

Length: 3117 bp
ATGAAAACTTTGCTACATTTCTTCCTTTTCTTGATCACATTCTGGGTCAGTATCATCATCCCAGCAGTTCACTGCCAGTGTCTCAAAGACCAGCAACTATCATTGCTCCAATTCAAGAAAAGCCTCGTGTTCGATGCTGATATTAGTCCTTCCACCAAGATTATTTCGTGGAATGCAAGTACTGATTGTTGTTCTTGGGTGGGCGTCACTTGCAGCCGTAATGGGCGTGTTCTGGGTCTTGACATAAGCAGCGAACAGATCTCAGATGGAATTGACAATTCCAGCAGTCTCTTCCATCTTCATTATCTTCAAAGCCTCAATCTGGCTGACAACGGACTTGGTGGCGGTAACTACAATCAATCAATTCCATCCGCCATCGGAAATCTCCTGAACTTGAGGTATCTGAATTTATCTCATACTTATTATTCAGGGCAAATTCCCATCGACATTTCTCGCTTGAAGAGGTTGGAAGTACTTGATTTTTCTAACAATTATTACCTCAAAGTTGGAAGTCCAAATTTACACATGTTGGTTCACAACTTCACAGAGCTTACAGAACTATATCTTGATGATGTCCAAATATCAGAACAGGGGAGTGAGTGGTGCCGAGCCGTATCATCTTCCCTTCCCAACCTCAGGGTCTTGAACATGTCCGGGTGTGGTCTCTCAGGCCCTATTCTCGAGTCCCTTGCCAAGCTTCAGTACCTATCTGTAATTAGTTTGGAATTGAACAATATCTCTGGGCCAGTTCCAGGATTCTTTGCCAAGTTTTCAAACTTGACTGTCTTGGGTCTCAGAAATTGCGGGTTGCATGGAACATTTCCCAAAGAGATCTTTCAGTTACCTTCTCTACAATCTATTGACCTGTCATTTAATCCCCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGGAATGGAGCTCTTCAGTACCTGGATCTAAGATTGACAAATTTTTCTGGGTTATTGCCAAATTCTATTGGCGATCTCAAAATGCTGTCCACCATACATATTCAAGACTGCAATTTCACCGGACCGATCCCCAAGTCTATGACAAACCTTACACAATTGGTACTATTAATTCCACCCACTGGAGAAACTTGACGAAGCTATCTTCTCTCATTTTGGAATCCAATAAGCTCGATGGGAATATCCCAGCATCTCTGTTTTCTCTTCCCTTGTTGGATCGTCTAGTTCTTTCCAGCAATCAACTCGCTGGTACGTTCCCTGAAATCTCAAATTTCTCTCAAGAAGGGCTGATACCTACGTCAATCTCTAGTTTGCGAGGGCTTTATTTGGATAGCAACAATCTCGAAGGGCCAATACCTATGTCTATCTTTAGCTTGCAAGGTCTTACCACTCTAGATCTTTCTTCAAATAATTTAAGTGGCTCGTTTCCTCTTGATGGTCTACGCCAGCTGAGAAATCTTTCTAAACTTGATCTTTCACACAATAACTTGTTTCTTACCCATGATTATACCAATTTCTCATATTCCTCATTTGCTCAAATCTTTGACTTGAGGTTGGTGTCATTGAAATTGAGAACATTTCCTAATTTCTTGAGAAATCAATCTAAATTGGCAACTTTGGACCTTTCAGATAACCAGATAAGTGGCAAGATACCCAACTGGATTGGGAGTTTTAGTAATCTCTATCTCCTAAATCTTTCTTGCAACTCCCTAGATTCTCTCGAAGTTCCTTCAATCAATCTCACTTATTTAGAGTTCCTTGACCTCCATTCCAACCAGTTTCATGGGCAAATCCCAATTTTTACATCTCCTTGCAATGTCTATTATCTAGATTTCTCGAGGAATTATTTCAGCTCTCCCATACCGAGTACCATTGGAGATGTGCTTGTTAACACTAGATTCCTGTCGCTTTCGAGCAATAACCTCACTGGGATCATTCCAAAATCATTATGCAATTCAAGAAGTCTTAATATTCTTGATCTGTCCAATAATTCTTTGAGTGGCACAGTTCCCCGGTGCTTGACTACAATGAGCACGCTTGGAGTACTCAATTTAAGGAGAAACAATCTTACAAATGTTAATGAATTCTCTCATAATTGCAGTTTAGAAACGCTAGACATCAGTGGAAATCAAATTCAAGGCCAGTTTTTAAAATCTCTTGTCCACTGCACCCAGTTAAAGGTTTTAAATCTTGGAAACAATCTTATAGCAGAACCATTTCCATGCTTTTTGAGAAACACATCCACCTTGCGTGTCCTTGTCTTGCGATCCAATAAATTCTATGGGCGCATTAGATGTCGCAAGACTAATGGCACTTGGCCAGTACTTCAAATCATAGACTTAGCTCACAACAATTTAAGTGGTGAAGTACCTGGAACAGCTTTGACAACTTGGCAGGCGATGAGGACTAGCAAAGATAATGCCCCATGGAAGATCAGTAACCTTCAATTTGGTTACAATGGAGCTTATTATAAAGAAGATACAGTCATGGTTAGCAAAAAAGGTGTAGAGATGGAGCTGGTCAATATTTTAACCATCTTCACCTCCATTGACTTCTCATGCAACAAGTTCAACGGATCAATACCCGAGGAAATTGGAGAACTCAAATCATTGTATGCCCTCAACTTGTCCAACAATGCTTTCACAGGTGCAGTTCCATCATCATTGAGTAACTTGAATCAGCTAGAGTCTTTGGACCTCTCGAAAAACAAACTAAGCGGTCAAATCCCACCGGAGCTTACAAAACTCACTTTCCTTGAATTCTTGAATCTCTCATATAATCAATTGGTCGGGAGGATACCAAGCCGTGCTCAATTTTCAACATTTGATGCAGCTTCCTTCCAAGGTAACAAAGGATTATGGGGGCCTCCTTTAACAGCAGATAATAACACAGGGTTCTCACCACCAAGGCAGGAAGGCAGCCATTCAAATCCCGGACATGAGATTGATTGGGATATTATCTGTCCTGAAATTGGATTTACATGTGGGTTTGGCATTGTCATCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTATAGAGCTATGTATAACATGCTTCTAAAGATGTTCCCTCAACTGGAAGAACGATTCGGTCATCACAGGAGACATGTCTATGCACATCAAAGATACTGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1038

Amino Acids

116.67

Weight (kDa)

8.43

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 72 1.1e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 90 - 190 8e-08 Leucine-rich repeat region
LRR_8 PF13855 426 - 486 4.3e-08 Leucine rich repeat
LRR_8 PF13855 525 - 583 1e-05 Leucine rich repeat
LRR_8 PF13855 643 - 701 3.1e-08 Leucine rich repeat
LRR_4 PF12799 690 - 726 9.6e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 849 - 913 2.8e-06 Leucine-rich repeat region
LRR_8 PF13855 859 - 918 5e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2439
AccB1I GGYRCC 1 cut(s) 603
AccB7I CCANNNNNTGG 1 cut(s) 1089
AccI GTMKAC 1 cut(s) 1408
AciI CCGC 4 cut(s) 345, 372, 804, 2685
AclWI GGATC 6 cut(s) 943, 1031, 1191, 1907, 2229, 2551
AcoI YGGCCR 1 cut(s) 2285
AcuI CTGAAG 2 cut(s) 683, 909
AcyI GRCGYC 1 cut(s) 204
AfiI CCNNNNNNNGG 8 cut(s) 322, 636, 752, 1089, 1403, 2146, 2939, 3052
AflIII ACRYGT 4 cut(s) 525, 648, 2948, 3082
AjnI CCWGG 3 cut(s) 751, 931, 2338
AjuI GAANNNNNNNTTGG 2 cut(s) 2591, 2623
Alw21I GWGCWC 3 cut(s) 923, 2003, 2779
Alw26I GTCTC 6 cut(s) 86, 293, 668, 797, 3073, 3103
AlwI GGATC 6 cut(s) 943, 1031, 1191, 1907, 2229, 2551
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 3 cut(s) 680, 1804, 2552
AoxI GGCC 6 cut(s) 670, 743, 1316, 2107, 2285, 2831
ApeKI GCWGC 4 cut(s) 213, 249, 2798, 2886
AseI ATTAAT 1 cut(s) 1077
Asp700I GAANNNNTTC 3 cut(s) 1426, 1814, 2184
AspLEI GCGC 1 cut(s) 2256
AspS9I GGNCC 7 cut(s) 671, 743, 1032, 1316, 1588, 2662, 2831
AsuC2I CCSGG 3 cut(s) 655, 1981, 2901
AsuHPI GGTGA 4 cut(s) 1019, 2342, 2500, 2859
AvaI CYCGRG 3 cut(s) 680, 1804, 2552
AvaII GGWCC 3 cut(s) 1032, 1588, 2662
AxyI CCTNAGG 1 cut(s) 635
BaeI ACNNNNGTAYC 2 cut(s) 1250, 1283
BalI TGGCCA 1 cut(s) 2287
BanI GGYRCC 1 cut(s) 603
BanII GRGCYC 1 cut(s) 923
BarI GAAGNNNNNNTAC 4 cut(s) 1242, 1274, 1305, 1337
BauI CACGAG 1 cut(s) 125
Bbv12I GWGCWC 3 cut(s) 923, 2003, 2779
BbvI GCAGC 4 cut(s) 225, 261, 2810, 2898
BceAI ACGGC 3 cut(s) 201, 596, 2757
BcgI CGANNNNNNTGC 8 cut(s) 671, 705, 1192, 1226, 1291, 1325, 2950, 2984
BciT130I CCWGG 3 cut(s) 753, 933, 2340
BciVI GTATCC 1 cut(s) 2757
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 3 cut(s) 655, 1981, 2901
BcoDI GTCTC 6 cut(s) 86, 293, 668, 797, 3073, 3103
BfaI CTAG 9 cut(s) 1190, 1275, 1361, 1679, 1796, 1863, 2081, 2376, 2651
BfuI GTATCC 1 cut(s) 2757
BglII AGATCT 3 cut(s) 258, 831, 1363
BisI GCNGC 4 cut(s) 214, 250, 2799, 2887
BlsI GCNGC 4 cut(s) 215, 251, 2800, 2888
BmcAI AGTACT 4 cut(s) 181, 474, 2013, 2292
Bme1390I CCNGG 6 cut(s) 655, 753, 933, 1981, 2340, 2901
Bme18I GGWCC 3 cut(s) 1032, 1588, 2662
BmeT110I CYCGRG 3 cut(s) 680, 1804, 2552
BmgT120I GGNCC 7 cut(s) 671, 743, 1032, 1316, 1588, 2662, 2831
BmiI GGNNCC 3 cut(s) 605, 892, 2832
BmrFI CCNGG 6 cut(s) 655, 753, 933, 1981, 2340, 2901
BmrI ACTGGG 2 cut(s) 1905, 2134
BmsI GCATC 3 cut(s) 124, 1166, 2785
BmuI ACTGGG 2 cut(s) 1905, 2134
BpmI CTGGAG 1 cut(s) 1111
BpuEI CTTGAG 4 cut(s) 415, 1230, 1537, 1579
BpuMI CCSGG 3 cut(s) 655, 1981, 2901
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 668, 797
BsaJI CCNNGG 6 cut(s) 908, 1979, 2393, 2553, 2809, 2873
BsaWI WCCGGW 2 cut(s) 1029, 2698
BsaXI ACNNNNNCTCC 2 cut(s) 1627, 1657
Bsc4I CCNNNNNNNGG 8 cut(s) 322, 636, 752, 1089, 1403, 2146, 2939, 3052
Bse21I CCTNAGG 1 cut(s) 635
Bse3DI GCAATG 2 cut(s) 101, 1789
BseBI CCWGG 3 cut(s) 753, 933, 2340
BseDI CCNNGG 6 cut(s) 908, 1979, 2393, 2553, 2809, 2873
BseGI GGATG 3 cut(s) 57, 368, 2207
BseLI CCNNNNNNNGG 8 cut(s) 322, 636, 752, 1089, 1403, 2146, 2939, 3052
BseMI GCAATG 2 cut(s) 101, 1789
BseMII CTCAG 5 cut(s) 276, 649, 681, 808, 1409
BseXI GCAGC 4 cut(s) 225, 261, 2810, 2898
BseYI CCCAGC 2 cut(s) 61, 1153
BsgI GTGCAG 2 cut(s) 2119, 2637
BshFI GGCC 6 cut(s) 672, 745, 1318, 2109, 2287, 2833
BshNI GGYRCC 1 cut(s) 603
BsiHKAI GWGCWC 3 cut(s) 923, 2003, 2779
BsiHKCI CYCGRG 3 cut(s) 680, 1804, 2552
BsiSI CCGG 5 cut(s) 654, 1030, 1981, 2699, 2901
BslFI GGGAC 1 cut(s) 670
BslI CCNNNNNNNGG 8 cut(s) 322, 636, 752, 1089, 1403, 2146, 2939, 3052
BsmAI GTCTC 6 cut(s) 86, 293, 668, 797, 3073, 3103
BsmBI CGTCTC 1 cut(s) 3103
BsmFI GGGAC 1 cut(s) 670
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 6 cut(s) 672, 745, 1318, 2109, 2287, 2833
Bso31I GGTCTC 2 cut(s) 668, 797
BsoBI CYCGRG 3 cut(s) 680, 1804, 2552
Bsp1286I GDGCHC 3 cut(s) 923, 2003, 2779
Bsp19I CCATGG 1 cut(s) 2393
BspACI CCGC 4 cut(s) 345, 372, 804, 2685
BspANI GGCC 6 cut(s) 672, 745, 1318, 2109, 2287, 2833
BspCNI CTCAG 5 cut(s) 275, 648, 680, 807, 1410
BspLI GGNNCC 3 cut(s) 605, 892, 2832
BspPI GGATC 6 cut(s) 943, 1031, 1191, 1907, 2229, 2551
BspQI GCTCTTC 1 cut(s) 928
BspT107I GGYRCC 1 cut(s) 603
BspTNI GGTCTC 2 cut(s) 668, 797
BsrDI GCAATG 2 cut(s) 101, 1789
BssECI CCNNGG 6 cut(s) 908, 1979, 2393, 2553, 2809, 2873
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 4 cut(s) 908, 2393, 2809, 2873
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 753, 933, 2340
Bst4CI ACNGT 3 cut(s) 784, 1975, 2452
Bst6I CTCTTC 4 cut(s) 296, 455, 928, 1176
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 4 cut(s) 1343, 1415, 2003, 2364
BstDEI CTNAG 8 cut(s) 262, 635, 667, 794, 939, 1418, 2308, 2681
BstDSI CCRYGG 1 cut(s) 2393
BstF5I GGATG 3 cut(s) 57, 368, 2207
BstHHI GCGC 1 cut(s) 2256
BstMAI GTCTC 6 cut(s) 86, 293, 668, 797, 3073, 3103
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 3 cut(s) 753, 933, 2340
BstNSI RCATGY 5 cut(s) 529, 652, 2952, 3031, 3086
BstSCI CCNGG 6 cut(s) 653, 751, 931, 1979, 2338, 2899
BstV1I GCAGC 4 cut(s) 225, 261, 2810, 2898
BstX2I RGATCY 4 cut(s) 258, 831, 935, 1363
BstXI CCANNNNNNTGG 4 cut(s) 887, 915, 1610, 1751
BstYI RGATCY 4 cut(s) 258, 831, 935, 1363
Bsu36I CCTNAGG 1 cut(s) 635
BsuI GTATCC 1 cut(s) 2757
BsuRI GGCC 6 cut(s) 672, 745, 1318, 2109, 2287, 2833
BtgI CCRYGG 1 cut(s) 2393
BtgZI GCGATG 1 cut(s) 2381
BtsCI GGATG 3 cut(s) 57, 368, 2207
BtsI GCAGTG 2 cut(s) 70, 2131
BtsIMutI CAGTG 6 cut(s) 70, 83, 1087, 1893, 2095, 2131
Cac8I GCNNGC 4 cut(s) 1343, 1415, 2003, 2364
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 1 cut(s) 2256
Cfr13I GGNCC 7 cut(s) 671, 743, 1032, 1316, 1588, 2662, 2831
CpoI CGGWCCG 1 cut(s) 1032
CseI GACGC 1 cut(s) 193
CspCI CAANNNNNGTGG 2 cut(s) 2308, 2343
CspI CGGWCCG 1 cut(s) 1032
DdeI CTNAG 8 cut(s) 262, 635, 667, 794, 939, 1418, 2308, 2681
DraI TTTAAA 2 cut(s) 2118, 2154
EaeI YGGCCR 1 cut(s) 2285
Eam1104I CTCTTC 4 cut(s) 296, 455, 928, 1176
EarI CTCTTC 4 cut(s) 296, 455, 928, 1176
EciI GGCGGA 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 921
Eco130I CCWWGG 4 cut(s) 908, 2393, 2809, 2873
Eco24I GRGCYC 1 cut(s) 923
Eco31I GGTCTC 2 cut(s) 668, 797
Eco47I GGWCC 3 cut(s) 1032, 1588, 2662
Eco53kI GAGCTC 1 cut(s) 921
Eco57I CTGAAG 2 cut(s) 683, 909
Eco81I CCTNAGG 1 cut(s) 635
Eco88I CYCGRG 3 cut(s) 680, 1804, 2552
EcoICRI GAGCTC 1 cut(s) 921
EcoO109I RGGNCCY 2 cut(s) 671, 2831
EcoRI GAATTC 3 cut(s) 902, 2051, 2726
EcoRII CCWGG 3 cut(s) 751, 931, 2338
EcoT14I CCWWGG 4 cut(s) 908, 2393, 2809, 2873
EcoT38I GRGCYC 1 cut(s) 923
ErhI CCWWGG 4 cut(s) 908, 2393, 2809, 2873
Esp3I CGTCTC 1 cut(s) 3103
FaqI GGGAC 1 cut(s) 670
FauI CCCGC 1 cut(s) 797
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 1408
Fnu4HI GCNGC 4 cut(s) 214, 250, 2799, 2887
FokI GGATG 3 cut(s) 44, 355, 2194
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 4 cut(s) 214, 250, 2799, 2887
FspBI CTAG 9 cut(s) 1190, 1275, 1361, 1679, 1796, 1863, 2081, 2376, 2651
GlaI GCGC 1 cut(s) 2255
GluI GCNGC 4 cut(s) 214, 250, 2799, 2887
GsaI CCCAGC 2 cut(s) 65, 1157
GsuI CTGGAG 1 cut(s) 1111
HaeIII GGCC 6 cut(s) 672, 745, 1318, 2109, 2287, 2833
HapII CCGG 5 cut(s) 654, 1030, 1981, 2699, 2901
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 2256
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 2254
HinP1I GCGC 1 cut(s) 2254
HincII GTYRAC 1 cut(s) 1858
HindII GTYRAC 1 cut(s) 1858
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 9 cut(s) 683, 756, 1127, 1682, 1866, 2644, 2654, 2734, 3063
HpaI GTTAAC 1 cut(s) 1858
HpaII CCGG 5 cut(s) 654, 1030, 1981, 2699, 2901
HphI GGTGA 4 cut(s) 1019, 2342, 2500, 2859
Hpy166II GTNNAC 6 cut(s) 70, 535, 1000, 1409, 1858, 2131
Hpy188I TCNGA 6 cut(s) 265, 380, 405, 586, 797, 1597
Hpy8I GTNNAC 6 cut(s) 70, 535, 1000, 1409, 1858, 2131
HpyAV CCTTC 9 cut(s) 159, 635, 855, 1244, 1307, 1707, 2420, 2815, 2876
HpyCH4III ACNGT 3 cut(s) 784, 1975, 2452
HpyCH4IV ACGT 3 cut(s) 1220, 1265, 3112
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 8 cut(s) 262, 635, 667, 794, 939, 1418, 2308, 2681
HpySE526I ACGT 3 cut(s) 1220, 1265, 3112
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 1 cut(s) 2254
Ksp22I TGATCA 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 1858
LguI GCTCTTC 1 cut(s) 928
LmnI GCTCC 5 cut(s) 111, 918, 2429, 2482, 2701
Lsp1109I GCAGC 4 cut(s) 225, 261, 2810, 2898
LweI GCATC 3 cut(s) 124, 1166, 2785
MaeI CTAG 9 cut(s) 1190, 1275, 1361, 1679, 1796, 1863, 2081, 2376, 2651
MaeII ACGT 3 cut(s) 1220, 1265, 3112
MaeIII GTNAC 8 cut(s) 205, 347, 840, 2405, 2420, 2636, 2813, 2973
MfeI CAATTG 2 cut(s) 1065, 2750
MflI RGATCY 4 cut(s) 258, 831, 935, 1363
MhlI GDGCHC 3 cut(s) 923, 2003, 2779
MlsI TGGCCA 1 cut(s) 2287
MluNI TGGCCA 1 cut(s) 2287
MlyI GAGTC 2 cut(s) 692, 2663
MmeI TCCRAC 5 cut(s) 447, 487, 1161, 1764, 2622
Mox20I TGGCCA 1 cut(s) 2287
MroXI GAANNNNTTC 3 cut(s) 1426, 1814, 2184
MscI TGGCCA 1 cut(s) 2287
MslI CAYNNNNRTG 2 cut(s) 2188, 3087
Msp20I TGGCCA 1 cut(s) 2287
MspA1I CMGCKG 1 cut(s) 1417
MspI CCGG 5 cut(s) 654, 1030, 1981, 2699, 2901
MspR9I CCNGG 6 cut(s) 655, 753, 933, 1981, 2340, 2901
MunI CAATTG 2 cut(s) 1065, 2750
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 3 cut(s) 753, 933, 2340
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 3 cut(s) 655, 1981, 2901
NcoI CCATGG 1 cut(s) 2393
NlaIV GGNNCC 3 cut(s) 605, 892, 2832
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 2 cut(s) 205, 2973
NspI RCATGY 5 cut(s) 529, 652, 2952, 3031, 3086
PaeR7I CTCGAG 2 cut(s) 680, 1804
PciI ACATGT 4 cut(s) 525, 648, 2948, 3082
PciSI GCTCTTC 1 cut(s) 928
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 3 cut(s) 1426, 1814, 2184
PfeI GAWTC 7 cut(s) 756, 1127, 1682, 1866, 2644, 2734, 3063
PflMI CCANNNNNTGG 1 cut(s) 1089
PfoI TCCNGGA 2 cut(s) 751, 2899
PkrI GCNGC 4 cut(s) 215, 251, 2800, 2888
PleI GAGTC 2 cut(s) 691, 2662
PpsI GAGTC 2 cut(s) 691, 2662
PscI ACATGT 4 cut(s) 525, 648, 2948, 3082
PshBI ATTAAT 1 cut(s) 1077
PsiI TTATAA 1 cut(s) 2439
Psp124BI GAGCTC 1 cut(s) 923
Psp6I CCWGG 3 cut(s) 751, 931, 2338
PspFI CCCAGC 2 cut(s) 61, 1153
PspGI CCWGG 3 cut(s) 751, 931, 2338
PspN4I GGNNCC 3 cut(s) 605, 892, 2832
PspPI GGNCC 7 cut(s) 671, 743, 1032, 1316, 1588, 2662, 2831
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 4 cut(s) 258, 831, 935, 1363
PvuII CAGCTG 1 cut(s) 1417
RseI CAYNNNNRTG 2 cut(s) 2188, 3087
Rsr2I CGGWCCG 1 cut(s) 1032
RsrII CGGWCCG 1 cut(s) 1032
SacI GAGCTC 1 cut(s) 923
SapI GCTCTTC 1 cut(s) 928
SatI GCNGC 4 cut(s) 214, 250, 2799, 2887
Sau96I GGNCC 7 cut(s) 671, 743, 1032, 1316, 1588, 2662, 2831
ScaI AGTACT 4 cut(s) 181, 474, 2013, 2292
SchI GAGTC 2 cut(s) 692, 2663
ScrFI CCNGG 6 cut(s) 655, 753, 933, 1981, 2340, 2901
SduI GDGCHC 3 cut(s) 923, 2003, 2779
SfaNI GCATC 3 cut(s) 124, 1166, 2785
Sfr274I CTCGAG 2 cut(s) 680, 1804
SinI GGWCC 3 cut(s) 1032, 1588, 2662
SlaI CTCGAG 2 cut(s) 680, 1804
SmiMI CAYNNNNRTG 2 cut(s) 2188, 3087
SmlI CTYRAG 6 cut(s) 394, 680, 1245, 1516, 1558, 1804
SmoI CTYRAG 6 cut(s) 394, 680, 1245, 1516, 1558, 1804
SsiI CCGC 4 cut(s) 345, 372, 804, 2685
SspI AATATT 2 cut(s) 1939, 2494
SspMI CTAG 9 cut(s) 1190, 1275, 1361, 1679, 1796, 1863, 2081, 2376, 2651
SstI GAGCTC 1 cut(s) 923
StyD4I CCNGG 6 cut(s) 653, 751, 931, 1979, 2338, 2899
StyI CCWWGG 4 cut(s) 908, 2393, 2809, 2873
TaaI ACNGT 3 cut(s) 784, 1975, 2452
TaiI ACGT 3 cut(s) 1223, 1268, 3115
TaqI TCGA 9 cut(s) 132, 444, 681, 1140, 1311, 1689, 1805, 1880, 2669
TaqII GACCGA 2 cut(s) 1049, 3056
TatI WGTACW 4 cut(s) 179, 472, 2011, 2290
TfiI GAWTC 7 cut(s) 756, 1127, 1682, 1866, 2644, 2734, 3063
TscAI CASTG 6 cut(s) 77, 83, 1094, 1900, 2095, 2138
TseFI GTSAC 2 cut(s) 205, 2973
TseI GCWGC 4 cut(s) 213, 249, 2798, 2886
Tsp45I GTSAC 2 cut(s) 205, 2973
TspDTI ATGAA 4 cut(s) 17, 290, 1739, 2064
TspGWI ACGGA 2 cut(s) 348, 2556
TspRI CASTG 6 cut(s) 77, 83, 1094, 1900, 2095, 2138
Van91I CCANNNNNTGG 1 cut(s) 1089
VpaK11BI GGWCC 3 cut(s) 1032, 1588, 2662
VspI ATTAAT 1 cut(s) 1077
XbaI TCTAGA 2 cut(s) 1360, 1795
XceI RCATGY 5 cut(s) 529, 652, 2952, 3031, 3086
XhoI CTCGAG 2 cut(s) 680, 1804
XmiI GTMKAC 1 cut(s) 1408
XmnI GAANNNNTTC 3 cut(s) 1426, 1814, 2184
XspI CTAG 9 cut(s) 1190, 1275, 1361, 1679, 1796, 1863, 2081, 2376, 2651
ZrmI AGTACT 4 cut(s) 181, 474, 2013, 2292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.