Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

21206717 .. 21210334

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATGAGAAAGAAGAGAGTGTTGGTAGTCGGAGGCACAGGTTATTTGGGGCAACATGTATTGCAAGGCTTTTCAGAGATTCAAGCCACCACCCTTTGCGATCTGGCCTTGACCCATCACTCCAATCCTCCTCCCCCAGCATTGCTCACTGCATTTCCTCATTTGCTGTCTTTCCATGTCGATTTGAAGACCGGCCAAGGATTTCAAGCCATTTCTCAAACGTTTGGGCCGCCTGATGTGGTCATAAACTGTGCTGCACTCTCCGTACCTCGTGCCTGTGAAATGGATCCTGCTGCTGCTATGTCTGTGAATGTGCCATCTTCTCTTGTAAATTGGTTATTGAGCTTAGAGGAGAGCAATTCTCTTCTGATCCAATTGTCAACCGATCAAGTTTATGAAGGGGCGAAGTCCTTTTACAAGGAAGATGATGAAACTGTACCTGTAAATGTTTATGGGAAATCAAAAGTGGCAGCAGAGCAATTCATTTCTGAAAAGTGTTCAAACTTTGCAATTTTGAGAAGCAGTATCATCTTTGGGCCACAGACAGTCTCGCCAGTTCCAAAATCTCTTCCAATTCAGTGGATTGATGGTGTCCTCTCCAAAGGAAATGCAAGCGAGTTCTTTCATGATGAGTTCCGTTGCCCTGTGTATGTAAAAGATGTTGTAGCTGCCATACTAGCTTTGTCCAAGAGATGGATATCAGACGGTAAGCAAACAAGGTTGCTACTAAATGTCGGTGGACCAGATAGGGTATCCCGTCTTCATATGGCTGAGACTGTTGCAGATATTAGGGGATACAATCCCTCATTGATCAAATCAGTGTCTGCATCAACGGTTGATCGTGGAGTAAAGTCTCCGGCTGACATATCCATGGACATCACTAAGCTGGTTCAGACACTTGCTGTTACTCCTACTTCATTTAGAGATGGTGTCAGATTGACGCTTTCAACGGAGGTTAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

322

Amino Acids

34.81

Weight (kDa)

7.04

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	693
AciI	CCGC	1 cut(s)	230
AclI	AACGTT	1 cut(s)	221
AclWI	GGATC	3 cut(s)	281, 294, 364
AcoI	YGGCCR	1 cut(s)	193
AfaI	GTAC	2 cut(s)	267, 438
AfiI	CCNNNNNNNGG	1 cut(s)	693
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	83, 187, 206, 501, 948
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	345, 668, 680, 886
AluI	AGCT	4 cut(s)	345, 668, 680, 886
Alw26I	GTCTC	3 cut(s)	553, 767, 858
AlwI	GGATC	3 cut(s)	281, 294, 364
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	105, 193, 227, 536
ApeKI	GCWGC	5 cut(s)	254, 293, 296, 470, 668
AspS9I	GGNCC	3 cut(s)	227, 536, 740
AvaII	GGWCC	1 cut(s)	740
BamHI	GGATCC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	4 cut(s)	398, 430, 744, 776
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	194, 752
BbvI	GCAGC	5 cut(s)	241, 280, 283, 482, 655
BccI	CCATC	5 cut(s)	123, 325, 581, 687, 920
BciVI	GTATCC	2 cut(s)	763, 788
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	3 cut(s)	553, 767, 858
BfaI	CTAG	1 cut(s)	677
BfuI	GTATCC	2 cut(s)	763, 788
BisI	GCNGC	6 cut(s)	230, 255, 294, 297, 471, 669
BlsI	GCNGC	6 cut(s)	231, 256, 295, 298, 472, 670
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	227, 536, 740
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	836
BpiI	GAAGAC	2 cut(s)	194, 752
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BsaBI	GATNNNNATC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	196, 870
BsaXI	ACNNNNNCTCC	1 cut(s)	944
Bsc4I	CCNNNNNNNGG	1 cut(s)	693
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	697
BseDI	CCNNGG	2 cut(s)	196, 870
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	693
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	120, 365
BseXI	GCAGC	5 cut(s)	241, 280, 283, 482, 655
BseYI	CCCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	107, 195, 229, 538
BsiSI	CCGG	2 cut(s)	192, 857
BslI	CCNNNNNNNGG	1 cut(s)	693
BsmAI	GTCTC	3 cut(s)	553, 767, 858
BsnI	GGCC	4 cut(s)	107, 195, 229, 538
Bsp143I	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
Bsp19I	CCATGG	1 cut(s)	870
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	4 cut(s)	107, 195, 229, 538
BspCNI	CTCAG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	3 cut(s)	281, 294, 364
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	196, 870
BssMI	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	196, 870
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	6 cut(s)	251, 436, 547, 707, 778, 835
Bst6I	CTCTTC	3 cut(s)	8, 369, 573
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	3 cut(s)	346, 771, 882
BstDSI	CCRYGG	1 cut(s)	870
BstKTI	GATC	6 cut(s)	103, 289, 372, 388, 813, 841
BstMAI	GTCTC	3 cut(s)	553, 767, 858
BstMBI	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	59
BstV1I	GCAGC	5 cut(s)	241, 280, 283, 482, 655
BstV2I	GAAGAC	2 cut(s)	194, 752
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	286
BsuI	GTATCC	2 cut(s)	763, 788
BsuRI	GGCC	4 cut(s)	107, 195, 229, 538
BtgI	CCRYGG	1 cut(s)	870
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	147, 584, 825
Cac8I	GCNNGC	1 cut(s)	613
CaiI	CAGNNNCTG	1 cut(s)	824
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	227, 536, 740
CseI	GACGC	1 cut(s)	949
Csp6I	GTAC	2 cut(s)	266, 437
CviAII	CATG	4 cut(s)	56, 176, 626, 871
CviQI	GTAC	2 cut(s)	266, 437
DdeI	CTNAG	3 cut(s)	346, 771, 882
DpnI	GATC	6 cut(s)	102, 288, 371, 387, 812, 840
DpnII	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	8, 369, 573
EarI	CTCTTC	3 cut(s)	8, 369, 573
Eco130I	CCWWGG	2 cut(s)	196, 870
Eco32I	GATATC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	740
EcoRV	GATATC	1 cut(s)	699
EcoT14I	CCWWGG	2 cut(s)	196, 870
ErhI	CCWWGG	2 cut(s)	196, 870
FaeI	CATG	4 cut(s)	59, 179, 629, 874
FatI	CATG	4 cut(s)	55, 175, 625, 870
FauNDI	CATATG	1 cut(s)	765
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	6 cut(s)	230, 255, 294, 297, 471, 669
Fsp4HI	GCNGC	6 cut(s)	230, 255, 294, 297, 471, 669
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	6 cut(s)	230, 255, 294, 297, 471, 669
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	107, 195, 229, 538
HapII	CCGG	2 cut(s)	192, 857
HgaI	GACGC	1 cut(s)	949
Hin1II	CATG	4 cut(s)	59, 179, 629, 874
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	192, 857
Hpy166II	GTNNAC	2 cut(s)	381, 740
Hpy188I	TCNGA	7 cut(s)	32, 76, 369, 490, 703, 894, 935
Hpy188III	TCNNGA	2 cut(s)	626, 963
Hpy8I	GTNNAC	2 cut(s)	381, 740
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	6 cut(s)	251, 436, 547, 707, 778, 835
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	7 cut(s)	64, 152, 257, 509, 611, 782, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	3 cut(s)	346, 771, 882
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	59, 179, 629, 874
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
Lsp1109I	GCAGC	5 cut(s)	241, 280, 283, 482, 655
LweI	GCATC	1 cut(s)	836
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	6 cut(s)	102, 288, 371, 387, 812, 840
MboI	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
MboII	GAAGA	7 cut(s)	25, 199, 312, 356, 434, 560, 752
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	6 cut(s)	331, 358, 374, 479, 510, 573
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	9 cut(s)	26, 138, 141, 168, 279, 343, 605, 814, 946
MseI	TTAA	1 cut(s)	957
MslI	CAYNNNNRTG	1 cut(s)	869
MspI	CCGG	2 cut(s)	192, 857
MunI	CAATTG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	677
NcoI	CCATGG	1 cut(s)	870
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
NlaIII	CATG	4 cut(s)	59, 179, 629, 874
NlaIV	GGNNCC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	693
PkrI	GCNGC	6 cut(s)	231, 256, 295, 298, 472, 670
PscI	ACATGT	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	227, 536, 740
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	267, 438
RsaNI	GTAC	2 cut(s)	266, 437
RseI	CAYNNNNRTG	1 cut(s)	869
SaqAI	TTAA	1 cut(s)	957
SatI	GCNGC	6 cut(s)	230, 255, 294, 297, 471, 669
Sau3AI	GATC	6 cut(s)	100, 286, 369, 385, 810, 838
Sau96I	GGNCC	3 cut(s)	227, 536, 740
SfaNI	GCATC	1 cut(s)	836
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	869
Sse9I	AATT	6 cut(s)	331, 358, 374, 479, 510, 573
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	677
StyI	CCWWGG	2 cut(s)	196, 870
TaaI	ACNGT	6 cut(s)	251, 436, 547, 707, 778, 835
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	180
TasI	AATT	6 cut(s)	331, 358, 374, 479, 510, 573
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	957
Tru9I	TTAA	1 cut(s)	957
TscAI	CASTG	3 cut(s)	154, 584, 825
TseI	GCWGC	5 cut(s)	254, 293, 296, 470, 668
TspDTI	ATGAA	6 cut(s)	411, 444, 472, 614, 752, 906
TspGWI	ACGGA	3 cut(s)	253, 626, 965
TspRI	CASTG	3 cut(s)	154, 584, 825
Van91I	CCANNNNNTGG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	740
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.