Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Reverse (-)

20968891 .. 20973572

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028280

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGCATGAACAATGGTTCCACCCCAATCCTTGCATTGGGTTATTCTGCCATTTGCAAAGACATCGAGTTTCCCGAATTGGGTTTTGAAAAATCAGAGGAAGAAAGAGAGTTGGTGATCGGAGCAAATGGGAGGAGGCGAACATGCGCACGGCGAGGGGGCCCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGAGCGGTGGGCCGTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTGCATTCCCATCGCCATGAAATCTGCCGAGCTCGAGAGGCTAAGCAAAGAAACTTGGTACTGAATTTTGGTGGATCGGACAGGGTATCCCGTGTTCAAATGGCTGAGACGGTTGCTGATATAAGGGCATACAACCTCTCTTTAATTAAATCTGTATCTGCATCATCGGTTGATCGTGGAGTTGAGTCTCCTGCAGACATATCCATGGATATAACTAAGCTAGTTCAGATGCTTGGTATTTCTCCGATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

176

Amino Acids

19.45

Weight (kDa)

9.25

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	2 cut(s)	169, 202
AclWI	GGATC	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	213, 333
AfiI	CCNNNNNNNGG	3 cut(s)	37, 80, 229
AgsI	TTSAA	2 cut(s)	89, 371
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	2 cut(s)	305, 493
AluI	AGCT	2 cut(s)	305, 493
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	3 cut(s)	166, 374, 465
AlwI	GGATC	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	4 cut(s)	160, 207, 219, 244
ApaI	GGGCCC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	149, 238
AspS9I	GGNCC	4 cut(s)	160, 161, 207, 220
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	164
BanII	GRGCYC	2 cut(s)	164, 307
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	307
BccI	CCATC	1 cut(s)	291
BceAI	ACGGC	4 cut(s)	167, 182, 194, 259
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 266, 300
BciVI	GTATCC	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	166, 374, 465
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	215, 465
BfuI	GTATCC	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	4 cut(s)	160, 161, 207, 220
BmiI	GGNNCC	3 cut(s)	19, 161, 162
BmsI	GCATC	2 cut(s)	443, 492
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	164, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 80, 229
Bse1I	ACTGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	164, 477
BseLI	CCNNNNNNNGG	3 cut(s)	37, 80, 229
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	4 cut(s)	162, 209, 221, 246
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	37, 80, 229
BsmAI	GTCTC	3 cut(s)	166, 374, 465
BsmBI	CGTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	162, 209, 221, 246
BsoBI	CYCGRG	1 cut(s)	306
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	164, 307
Bsp143I	GATC	3 cut(s)	117, 347, 445
Bsp1720I	GCTNAGC	1 cut(s)	315
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	2 cut(s)	169, 202
BspANI	GGCC	4 cut(s)	162, 209, 221, 246
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	19, 161, 162
BspMAI	CTGCAG	2 cut(s)	219, 469
BspPI	GGATC	1 cut(s)	355
BsrBI	CCGCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	164, 477
BssMI	GATC	3 cut(s)	117, 347, 445
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	315, 378, 489
BstDSI	CCRYGG	2 cut(s)	164, 477
BstHHI	GCGC	2 cut(s)	149, 238
BstKTI	GATC	3 cut(s)	120, 350, 448
BstMAI	GTCTC	3 cut(s)	166, 374, 465
BstMBI	GATC	3 cut(s)	117, 347, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 311
BstNSI	RCATGY	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	215, 465
BstSLI	GKGCMC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	4 cut(s)	162, 209, 221, 246
BtgI	CCRYGG	2 cut(s)	164, 477
BtgZI	GCGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	2 cut(s)	149, 238
Cfr13I	GGNCC	4 cut(s)	160, 161, 207, 220
Csp6I	GTAC	2 cut(s)	212, 332
CviAII	CATG	6 cut(s)	7, 144, 197, 254, 290, 478
CviJI	RGCY	8 cut(s)	162, 209, 221, 246, 305, 314, 377, 493
CviKI_1	RGCY	8 cut(s)	162, 209, 221, 246, 305, 314, 377, 493
CviQI	GTAC	2 cut(s)	212, 332
DdeI	CTNAG	3 cut(s)	315, 378, 489
DpnI	GATC	3 cut(s)	119, 349, 447
DpnII	GATC	3 cut(s)	117, 347, 445
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	164, 307
Eco53kI	GAGCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	2 cut(s)	164, 307
ErhI	CCWWGG	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	6 cut(s)	10, 147, 200, 257, 293, 481
FatI	CATG	6 cut(s)	6, 143, 196, 253, 289, 477
FriOI	GRGCYC	2 cut(s)	164, 307
FspAI	RTGCGCAY	1 cut(s)	148
FspBI	CTAG	1 cut(s)	494
FspI	TGCGCA	1 cut(s)	148
GlaI	GCGC	2 cut(s)	148, 237
HaeIII	GGCC	4 cut(s)	162, 209, 221, 246
HhaI	GCGC	2 cut(s)	149, 238
Hin1II	CATG	6 cut(s)	10, 147, 200, 257, 293, 481
Hin6I	GCGC	2 cut(s)	147, 236
HinP1I	GCGC	2 cut(s)	147, 236
HinfI	GANTC	2 cut(s)	262, 458
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	6 cut(s)	97, 122, 261, 352, 501, 519
Hpy188III	TCNNGA	2 cut(s)	74, 308
HpyAV	CCTTC	2 cut(s)	179, 257
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	6 cut(s)	35, 57, 217, 277, 434, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 311
HpyF3I	CTNAG	3 cut(s)	315, 378, 489
Hsp92II	CATG	6 cut(s)	10, 147, 200, 257, 293, 481
HspAI	GCGC	2 cut(s)	147, 236
Kzo9I	GATC	3 cut(s)	117, 347, 445
LmnI	GCTCC	2 cut(s)	122, 193
LpnPI	CCDG	5 cut(s)	164, 203, 215, 340, 477
LweI	GCATC	2 cut(s)	443, 492
MaeI	CTAG	1 cut(s)	494
MalI	GATC	3 cut(s)	119, 349, 447
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	3 cut(s)	117, 347, 445
MboII	GAAGA	2 cut(s)	113, 257
MhlI	GDGCHC	2 cut(s)	164, 307
MluCI	AATT	3 cut(s)	77, 337, 417
MlyI	GAGTC	2 cut(s)	271, 467
MnlI	CCTC	7 cut(s)	91, 126, 129, 149, 279, 304, 419
MseI	TTAA	2 cut(s)	416, 420
MslI	CAYNNNNRTG	2 cut(s)	288, 476
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	233, 311
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	117, 347, 445
NlaIII	CATG	6 cut(s)	10, 147, 200, 257, 293, 481
NlaIV	GGNNCC	3 cut(s)	19, 161, 162
NmeAIII	GCCGAG	1 cut(s)	326
NsbI	TGCGCA	1 cut(s)	148
NspI	RCATGY	1 cut(s)	147
PacI	TTAATTAA	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	229
PleI	GAGTC	2 cut(s)	270, 466
PpsI	GAGTC	2 cut(s)	270, 466
Psp124BI	GAGCTC	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	19, 161, 162
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	160, 161, 207, 220
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PstI	CTGCAG	2 cut(s)	219, 469
RsaI	GTAC	2 cut(s)	213, 333
RsaNI	GTAC	2 cut(s)	212, 332
RseI	CAYNNNNRTG	2 cut(s)	288, 476
SacI	GAGCTC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	416, 420
Sau3AI	GATC	3 cut(s)	117, 347, 445
Sau96I	GGNCC	4 cut(s)	160, 161, 207, 220
SchI	GAGTC	2 cut(s)	271, 467
SduI	GDGCHC	2 cut(s)	164, 307
SetI	ASST	4 cut(s)	190, 307, 411, 495
SfaNI	GCATC	2 cut(s)	443, 492
SfcI	CTRYAG	2 cut(s)	215, 465
Sfr274I	CTCGAG	1 cut(s)	306
SlaI	CTCGAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	288, 476
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	77, 337, 417
SsiI	CCGC	2 cut(s)	169, 202
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	66, 307
TasI	AATT	3 cut(s)	77, 337, 417
Tru1I	TTAA	2 cut(s)	416, 420
Tru9I	TTAA	2 cut(s)	416, 420
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	3 cut(s)	23, 306, 513
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	306
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.