Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011028.1

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

13996 .. 16497

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011028.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgcctttctctgtggatttgaagtctggcaatggattcgaagccatttctcatctgtttggtccgcctgatgtggtagtaaactgtgctgcactttcggttcctcgtgcctgtgaaatggatcctgctgcagctatgtcagttaatgtgccatcttctcttgttaattggttattgagcttagaagagatttatgaaggggtgaagtctttttacaaggaagatgatgaagttgttccagtaaatgtttatgggaaatcaaaagtggcagctgagcagttcattactgagaaatgctcaaactttgcaattttgagaagcagtatcatctttgggccacagacaatctcaccagtttcaaaatctcttccaattcagtgggttgatggtgtcctctccaaaggaaatacaaccgaattctttcatgatgagtttcgatgccctgtgtatgtaaaggatgttgtagcaatcatacttgctttgtccaagacatggatatcaaaggctaagcaaagaaaattgctactgaatgttggtggaccggacagggtatcccgtgtacaaatggctgagacggttgctgatatgaggggatacaacctcttattaattaaatctgtatctgcatcatcggttgatcgtggagttatgtctcctgctgacatatccatggatataactaagctagttcagacgcttggtatttctcctatttcatttcgagatggtgtcagattgacgcttgaactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

250

Amino Acids

27.29

Weight (kDa)

5.78

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	492
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	116, 129
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	3 cut(s)	22, 360, 746
AluBI	AGCT	4 cut(s)	134, 180, 272, 685
AluI	AGCT	4 cut(s)	134, 180, 272, 685
Alw26I	GTCTC	2 cut(s)	566, 657
AlwI	GGATC	2 cut(s)	116, 129
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	4 cut(s)	89, 128, 131, 269
ApoI	RAATTY	1 cut(s)	416
AseI	ATTAAT	1 cut(s)	608
Asp700I	GAANNNNTTC	2 cut(s)	234, 420
AspS9I	GGNCC	3 cut(s)	62, 335, 539
AsuHPI	GGTGA	2 cut(s)	214, 342
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	62, 539
BamHI	GGATCC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BauI	CACGAG	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	76, 115, 143, 281
BccI	CCATC	3 cut(s)	160, 380, 719
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciVI	GTATCC	2 cut(s)	562, 587
BcoDI	GTCTC	2 cut(s)	566, 657
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	129
BfuI	GTATCC	2 cut(s)	562, 587
BisI	GCNGC	4 cut(s)	90, 129, 132, 270
BlpI	GCTNAGC	2 cut(s)	273, 507
BlsI	GCNGC	4 cut(s)	91, 130, 133, 271
Bme18I	GGWCC	2 cut(s)	62, 539
BmgT120I	GGNCC	3 cut(s)	62, 335, 539
BmiI	GGNNCC	2 cut(s)	102, 123
BmsI	GCATC	2 cut(s)	428, 635
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu1102I	GCTNAGC	2 cut(s)	273, 507
Bpu14I	TTCGAA	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	669
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	239, 353
Bse3DI	GCAATG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	264, 279, 561
BseNI	ACTGG	2 cut(s)	239, 353
BseXI	GCAGC	4 cut(s)	76, 115, 143, 281
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	2 cut(s)	566, 657
BsmBI	CGTCTC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	337
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	2 cut(s)	121, 637
Bsp1720I	GCTNAGC	2 cut(s)	273, 507
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	3 cut(s)	265, 280, 562
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	102, 123
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	116, 129
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	239, 353
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	2 cut(s)	121, 637
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	669
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	86, 577, 750
Bst6I	CTCTTC	2 cut(s)	180, 372
BstAUI	TGTACA	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	39
BstDEI	CTNAG	6 cut(s)	181, 273, 288, 507, 570, 681
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	124, 640
BstMAI	GTCTC	2 cut(s)	566, 657
BstMBI	GATC	2 cut(s)	121, 637
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	76, 115, 143, 281
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	2 cut(s)	562, 587
BsuRI	GGCC	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	3 cut(s)	62, 335, 539
CseI	GACGC	2 cut(s)	703, 748
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	3 cut(s)	425, 492, 670
CviJI	RGCY	8 cut(s)	44, 134, 180, 272, 337, 506, 569, 685
CviKI_1	RGCY	8 cut(s)	44, 134, 180, 272, 337, 506, 569, 685
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	6 cut(s)	181, 273, 288, 507, 570, 681
DpnI	GATC	2 cut(s)	123, 639
DpnII	GATC	2 cut(s)	121, 637
Eam1104I	CTCTTC	2 cut(s)	180, 372
EarI	CTCTTC	2 cut(s)	180, 372
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	669
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	62, 539
EcoRI	GAATTC	1 cut(s)	416
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	669
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	3 cut(s)	428, 495, 673
FatI	CATG	3 cut(s)	424, 491, 669
Fnu4HI	GCNGC	4 cut(s)	90, 129, 132, 270
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	4 cut(s)	90, 129, 132, 270
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	4 cut(s)	90, 129, 132, 270
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	542
HgaI	GACGC	2 cut(s)	703, 748
Hin1II	CATG	3 cut(s)	428, 495, 673
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	214, 342
Hpy166II	GTNNAC	3 cut(s)	82, 539, 560
Hpy188I	TCNGA	2 cut(s)	693, 734
Hpy188III	TCNNGA	2 cut(s)	425, 722
Hpy8I	GTNNAC	3 cut(s)	82, 539, 560
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	3 cut(s)	86, 577, 750
HpyCH4V	TGCA	4 cut(s)	92, 131, 308, 626
HpyF3I	CTNAG	6 cut(s)	181, 273, 288, 507, 570, 681
Hsp92II	CATG	3 cut(s)	428, 495, 673
Kzo9I	GATC	2 cut(s)	121, 637
Lsp1109I	GCAGC	4 cut(s)	76, 115, 143, 281
LweI	GCATC	2 cut(s)	428, 635
MaeI	CTAG	1 cut(s)	686
MalI	GATC	2 cut(s)	123, 639
MboI	GATC	2 cut(s)	121, 637
MboII	GAAGA	4 cut(s)	147, 197, 233, 359
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	6 cut(s)	166, 309, 372, 416, 518, 609
MnlI	CCTC	4 cut(s)	114, 404, 582, 611
MroXI	GAANNNNTTC	2 cut(s)	234, 420
MseI	TTAA	4 cut(s)	144, 165, 608, 612
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	2 cut(s)	121, 637
NlaIII	CATG	3 cut(s)	428, 495, 673
NlaIV	GGNNCC	2 cut(s)	102, 123
NspV	TTCGAA	1 cut(s)	39
PacI	TTAATTAA	1 cut(s)	612
PagI	TCATGA	1 cut(s)	424
PdmI	GAANNNNTTC	2 cut(s)	234, 420
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	492
PkrI	GCNGC	4 cut(s)	91, 130, 133, 271
PshBI	ATTAAT	1 cut(s)	608
PspN4I	GGNNCC	2 cut(s)	102, 123
PspPI	GGNCC	3 cut(s)	62, 335, 539
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	4 cut(s)	144, 165, 608, 612
SatI	GCNGC	4 cut(s)	90, 129, 132, 270
Sau3AI	GATC	2 cut(s)	121, 637
Sau96I	GGNCC	3 cut(s)	62, 335, 539
SetI	ASST	5 cut(s)	136, 182, 274, 603, 687
SfaNI	GCATC	2 cut(s)	428, 635
SfcI	CTRYAG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	62, 539
SmiMI	CAYNNNNRTG	1 cut(s)	668
Sse9I	AATT	6 cut(s)	166, 309, 372, 416, 518, 609
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	3 cut(s)	86, 577, 750
TaqI	TCGA	3 cut(s)	39, 436, 721
TasI	AATT	6 cut(s)	166, 309, 372, 416, 518, 609
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	4 cut(s)	144, 165, 608, 612
Tru9I	TTAA	4 cut(s)	144, 165, 608, 612
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	4 cut(s)	89, 128, 131, 269
TspDTI	ATGAA	5 cut(s)	210, 243, 271, 413, 705
TspRI	CASTG	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	492
VpaK11BI	GGWCC	2 cut(s)	62, 539
VspI	ATTAAT	1 cut(s)	608
XapI	RAATTY	1 cut(s)	416
XmnI	GAANNNNTTC	2 cut(s)	234, 420
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.