Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

15709429 .. 15711221

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1052100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACGAGTAAGAAGAGAGTGCTGGTAGTTGGAGGCACAGGTTGCTTAGGCCAGCATGTACTGCAATGGTTCTCAGAGATTGAAGGGATCACAGCAACCACCCCTTTCGGTCTGGCGCTTACCCACCACTCCAGTCCTCCTCCCCAAGCATTGCTCGACGCATTTCCCCAGTTGCTGCATTTCCATATCGATTTGAAGACCGGCCATGGATTTCAAGCCATTTCTCAGACGTTTGCCGGCTGCACTGCACTCTCCGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCTGCTATGTCTGTGAATGTTCCATCTTCTCTTGTGAATTGGTTATCAAGCTTTGAAGAGAGTAGTTCTCTTCTGATGCATTTATTTTTTATCCATTTACATATCTATTTGAGTACAAATGGCTCAACAAAACTAGAGAAGAGAAAAATAAGAAAAGAAAATGGCAATGGACGAACAATAATAGCAGATACTACCAACGTAACAACTTTCTTAAAATCATTCTTAAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

8.89

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	95, 272, 285
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	2 cut(s)	60, 400
AgsI	TTSAA	4 cut(s)	83, 196, 215, 341
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
AlwI	GGATC	3 cut(s)	95, 272, 285
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	49, 202
ApeKI	GCWGC	4 cut(s)	175, 240, 284, 287
AspLEI	GCGC	1 cut(s)	118
BamHI	GGATCC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	4 cut(s)	162, 227, 271, 274
BccI	CCATC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	419, 517
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	4 cut(s)	176, 241, 285, 288
BlsI	GCNGC	4 cut(s)	177, 242, 286, 289
BmiI	GGNNCC	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	205
Bse118I	RCCGGY	2 cut(s)	200, 236
Bse1I	ACTGG	2 cut(s)	132, 169
Bse3DI	GCAATG	3 cut(s)	71, 149, 457
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	205
BseMI	GCAATG	3 cut(s)	71, 149, 457
BseMII	CTCAG	2 cut(s)	87, 239
BseNI	ACTGG	2 cut(s)	132, 169
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	162, 227, 271, 274
BsgI	GTGCAG	2 cut(s)	226, 231
BshFI	GGCC	2 cut(s)	51, 204
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	201, 237
BsnI	GGCC	2 cut(s)	51, 204
Bsp143I	GATC	2 cut(s)	87, 277
Bsp19I	CCATGG	1 cut(s)	205
BspANI	GGCC	2 cut(s)	51, 204
BspCNI	CTCAG	2 cut(s)	86, 238
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	3 cut(s)	95, 272, 285
BsrDI	GCAATG	3 cut(s)	71, 149, 457
BsrFI	RCCGGY	2 cut(s)	200, 236
BsrI	ACTGG	2 cut(s)	132, 169
BssAI	RCCGGY	2 cut(s)	200, 236
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	87, 277
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	261
Bst6I	CTCTTC	4 cut(s)	8, 336, 360, 419
BstAPI	GCANNNNNTGC	2 cut(s)	42, 61
BstC8I	GCNNGC	2 cut(s)	53, 238
BstDEI	CTNAG	3 cut(s)	46, 73, 225
BstDSI	CCRYGG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	2 cut(s)	90, 280
BstMBI	GATC	2 cut(s)	87, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 61
BstNSI	RCATGY	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	162, 227, 271, 274
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	51, 204
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	53, 238
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	2 cut(s)	200, 236
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	59, 399
CviAII	CATG	2 cut(s)	56, 206
CviJI	RGCY	6 cut(s)	51, 204, 218, 240, 336, 408
CviKI_1	RGCY	6 cut(s)	51, 204, 218, 240, 336, 408
CviQI	GTAC	2 cut(s)	59, 399
DdeI	CTNAG	3 cut(s)	46, 73, 225
DpnI	GATC	2 cut(s)	89, 279
DpnII	GATC	2 cut(s)	87, 277
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	8, 336, 360, 419
EarI	CTCTTC	4 cut(s)	8, 336, 360, 419
Eco130I	CCWWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	59, 209
FaiI	YATR	5 cut(s)	57, 186, 207, 293, 387
FatI	CATG	2 cut(s)	55, 205
Fnu4HI	GCNGC	4 cut(s)	176, 241, 285, 288
Fsp4HI	GCNGC	4 cut(s)	176, 241, 285, 288
FspBI	CTAG	2 cut(s)	419, 517
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	176, 241, 285, 288
GsuI	CTGGAG	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	51, 204
HapII	CCGG	2 cut(s)	201, 237
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	59, 209
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	334
HpaII	CCGG	2 cut(s)	201, 237
Hpy188I	TCNGA	3 cut(s)	76, 228, 360
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	230, 483
HpyCH4V	TGCA	5 cut(s)	64, 178, 243, 248, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 61
HpyF3I	CTNAG	3 cut(s)	46, 73, 225
HpySE526I	ACGT	2 cut(s)	230, 483
Hsp92II	CATG	2 cut(s)	59, 209
HspAI	GCGC	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	87, 277
Lsp1109I	GCAGC	4 cut(s)	162, 227, 271, 274
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	419, 517
MaeII	ACGT	2 cut(s)	230, 483
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	2 cut(s)	89, 279
MboI	GATC	2 cut(s)	87, 277
MboII	GAAGA	6 cut(s)	25, 208, 303, 347, 353, 436
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	26, 147, 150, 270
Mph1103I	ATGCAT	1 cut(s)	366
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	2 cut(s)	497, 509
MspI	CCGG	2 cut(s)	201, 237
MwoI	GCNNNNNNNGC	2 cut(s)	42, 61
NaeI	GCCGGC	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	2 cut(s)	87, 277
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	59, 209
NlaIV	GGNNCC	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	177, 242, 286, 289
PspN4I	GGNNCC	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	60, 400
RsaNI	GTAC	2 cut(s)	59, 399
SaqAI	TTAA	2 cut(s)	497, 509
SatI	GCNGC	4 cut(s)	176, 241, 285, 288
Sau3AI	GATC	2 cut(s)	87, 277
SetI	ASST	4 cut(s)	43, 233, 338, 486
SfaNI	GCATC	1 cut(s)	351
Sse9I	AATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	419, 517
StyI	CCWWGG	1 cut(s)	205
TaiI	ACGT	2 cut(s)	233, 486
TaqI	TCGA	2 cut(s)	156, 189
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	322
TatI	WGTACW	2 cut(s)	58, 398
Tru1I	TTAA	2 cut(s)	497, 509
Tru9I	TTAA	2 cut(s)	497, 509
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	4 cut(s)	175, 240, 284, 287
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	2 cut(s)	419, 517
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.