Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

46582423 .. 46584830

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGCTCAAGGGAACTTAAAATCTCTGAACATGCTAAAACAATCAACTTGCATGGGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCGGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCAGCTATGTCAGTTAATGTGCCATCTTCTCTTGTTAATTGGTTATCGAGCTTAGAAGAGAGTAATTATCTTCTGATCCATTTGTCAACTGATCAAGGGGTGAAGTCTTTTTACAAGGAAGATGATGAAGTTGTTCCAGTAAATGTTTATGGGAAATCCAAAGTGGCAGCTGAGCAGTTCATTACTGAGAAATGCTCAAACTTTGCAATTTTGAGAAGCAGTATCATCTTTGGGCCACAGACAATCTCACCGGTTTCAAAATCTCTTCCGATTCAGTGGGTTGATGGAGTCCTCTCCAAAGGGAATACAACGGAATTCTTTCATGATGAGTTTCGATGCCCTGTGTATGTAAAGGATGTCGTAGCAATCATACTTGCTTTGTCCAAGACATGGATATCAGAGGCTAAGCAAAGAAAATTGCTACTGAATGTTGGTGGACCTGACAGGGTATCCCGTGTACAAATGGCTGAGACGGTTGCTGATATAAGGGGATACAACCTCTCATTAATTAAATCTGTATCTGCATCATCGGTTGATCGTGGAGTTATGTCTCCAGCTGACATATCCATGGATATAACTAAGCTAGTTCAGACGCTCGGTATTTCTCCTATTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

246

Amino Acids

26.86

Weight (kDa)

6.1

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	10 - 169	3.7e-11	NAD dependent epimerase/dehydratase family
RmlD_sub_bind	PF04321	12 - 244	3e-31	RmlD substrate binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	510
AclWI	GGATC	3 cut(s)	107, 120, 190
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	378
AluBI	AGCT	5 cut(s)	125, 171, 290, 677, 703
AluI	AGCT	5 cut(s)	125, 171, 290, 677, 703
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	584, 675
AlwI	GGATC	3 cut(s)	107, 120, 190
AoxI	GGCC	2 cut(s)	56, 353
ApeKI	GCWGC	4 cut(s)	80, 119, 122, 287
ApoI	RAATTY	1 cut(s)	434
AseI	ATTAAT	1 cut(s)	626
AsiGI	ACCGGT	1 cut(s)	370
Asp700I	GAANNNNTTC	2 cut(s)	252, 438
AspS9I	GGNCC	3 cut(s)	56, 353, 557
AsuHPI	GGTGA	2 cut(s)	232, 360
AvaII	GGWCC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	112
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	67, 106, 134, 299
BccI	CCATC	2 cut(s)	151, 398
BciVI	GTATCC	2 cut(s)	580, 605
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	584, 675
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	580, 605
BisI	GCNGC	4 cut(s)	81, 120, 123, 288
BlpI	GCTNAGC	2 cut(s)	291, 525
BlsI	GCNGC	4 cut(s)	82, 121, 124, 289
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	3 cut(s)	56, 353, 557
BmiI	GGNNCC	2 cut(s)	93, 114
BmsI	GCATC	2 cut(s)	446, 653
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	1 cut(s)	657
Bpu1102I	GCTNAGC	2 cut(s)	291, 525
BsaJI	CCNNGG	1 cut(s)	687
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	687
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMII	CTCAG	3 cut(s)	282, 297, 579
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	67, 106, 134, 299
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	58, 355
BshTI	ACCGGT	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	2 cut(s)	584, 675
BsmBI	CGTCTC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	58, 355
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	112, 195, 211, 655
Bsp1720I	GCTNAGC	2 cut(s)	291, 525
Bsp19I	CCATGG	1 cut(s)	687
BspANI	GGCC	2 cut(s)	58, 355
BspCNI	CTCAG	3 cut(s)	283, 298, 580
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	93, 114
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	3 cut(s)	107, 120, 190
BsrFI	RCCGGY	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	4 cut(s)	112, 195, 211, 655
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	77, 595
Bst6I	CTCTTC	2 cut(s)	171, 390
BstAUI	TGTACA	1 cut(s)	577
BstDEI	CTNAG	6 cut(s)	172, 291, 306, 525, 588, 699
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	4 cut(s)	115, 198, 214, 658
BstMAI	GTCTC	2 cut(s)	584, 675
BstMBI	GATC	4 cut(s)	112, 195, 211, 655
BstNSI	RCATGY	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	67, 106, 134, 299
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuI	GTATCC	2 cut(s)	580, 605
BsuRI	GGCC	2 cut(s)	58, 355
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	56, 353, 557
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	1 cut(s)	578
CspAI	ACCGGT	1 cut(s)	370
CviAII	CATG	5 cut(s)	32, 53, 443, 510, 688
CviJI	RGCY	9 cut(s)	58, 125, 171, 290, 355, 524, 587, 677, 703
CviKI_1	RGCY	9 cut(s)	58, 125, 171, 290, 355, 524, 587, 677, 703
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	6 cut(s)	172, 291, 306, 525, 588, 699
DpnI	GATC	4 cut(s)	114, 197, 213, 657
DpnII	GATC	4 cut(s)	112, 195, 211, 655
Eam1104I	CTCTTC	2 cut(s)	171, 390
EarI	CTCTTC	2 cut(s)	171, 390
Eco130I	CCWWGG	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	434
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	687
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	5 cut(s)	35, 56, 446, 513, 691
FatI	CATG	5 cut(s)	31, 52, 442, 509, 687
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	81, 120, 123, 288
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	81, 120, 123, 288
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	4 cut(s)	81, 120, 123, 288
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	2 cut(s)	58, 355
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	721
Hin1II	CATG	5 cut(s)	35, 56, 446, 513, 691
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	391, 408
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	232, 360
Hpy166II	GTNNAC	4 cut(s)	73, 207, 557, 578
Hpy188I	TCNGA	5 cut(s)	28, 195, 390, 520, 711
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	4 cut(s)	73, 207, 557, 578
HpyCH4III	ACNGT	2 cut(s)	77, 595
HpyCH4V	TGCA	5 cut(s)	52, 83, 122, 326, 644
HpyF3I	CTNAG	6 cut(s)	172, 291, 306, 525, 588, 699
Hsp92II	CATG	5 cut(s)	35, 56, 446, 513, 691
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	112, 195, 211, 655
LpnPI	CCDG	9 cut(s)	72, 115, 129, 270, 384, 474, 550, 573, 687
Lsp1109I	GCAGC	4 cut(s)	67, 106, 134, 299
LweI	GCATC	2 cut(s)	446, 653
MaeI	CTAG	1 cut(s)	704
MalI	GATC	4 cut(s)	114, 197, 213, 657
MboI	GATC	4 cut(s)	112, 195, 211, 655
MboII	GAAGA	5 cut(s)	138, 182, 188, 251, 377
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	157, 184, 327, 434, 536, 627
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	4 cut(s)	105, 422, 514, 629
MroXI	GAANNNNTTC	2 cut(s)	252, 438
MseI	TTAA	5 cut(s)	18, 135, 156, 626, 630
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	290, 677
MspI	CCGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	4 cut(s)	112, 195, 211, 655
NlaIII	CATG	5 cut(s)	35, 56, 446, 513, 691
NlaIV	GGNNCC	2 cut(s)	93, 114
NspI	RCATGY	1 cut(s)	35
PacI	TTAATTAA	1 cut(s)	630
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	2 cut(s)	252, 438
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	510
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	82, 121, 124, 289
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	626
PspN4I	GGNNCC	2 cut(s)	93, 114
PspPI	GGNCC	3 cut(s)	56, 353, 557
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	290, 677
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	5 cut(s)	18, 135, 156, 626, 630
SatI	GCNGC	4 cut(s)	81, 120, 123, 288
Sau3AI	GATC	4 cut(s)	112, 195, 211, 655
Sau96I	GGNCC	3 cut(s)	56, 353, 557
SchI	GAGTC	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	127, 173, 292, 562, 621, 679, 705
SfaNI	GCATC	2 cut(s)	446, 653
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	6 cut(s)	157, 184, 327, 434, 536, 627
SspMI	CTAG	1 cut(s)	704
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	2 cut(s)	77, 595
TaqI	TCGA	2 cut(s)	167, 454
TasI	AATT	6 cut(s)	157, 184, 327, 434, 536, 627
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	5 cut(s)	18, 135, 156, 626, 630
Tru9I	TTAA	5 cut(s)	18, 135, 156, 626, 630
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	4 cut(s)	80, 119, 122, 287
TspDTI	ATGAA	4 cut(s)	261, 289, 431, 723
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	626
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	35
XmnI	GAANNNNTTC	2 cut(s)	252, 438
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.