Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Reverse (-)

33641077 .. 33646270

Gene Structure 5194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGACGGAACCAGAGACTTCCGGTGAGGAAAAGCCAATCTTCGCGCCGACCGACTCCTTCAGCCACAGCACCCAAACCCTAGAGCAACCTGCAACGCCGTGGATCGACTACGCGATTGAGCAGGCTCGGGTTTACCAGAAAAACATCGAAGAGACCCTAAACTCCGCCCTCGAAGCTTCTAGATCACGCCTCTCCGAGATTCGGGCCACCGGCTCTGCTCATTTGAGCCAGACCATTGACTCATTGGAAGATGTCAAGTCTAGCTATGCTGATTATGAGGATATTTTACTTGCGAAGATTAAAGAGGGTGCTTCTGTTGCGGCTTCACATCCGGTGATTACTGGTGGAGTTGCTGCTGCTTTGGGGTTTACGGTTCTAAAAGGACCACGACGCTTCTTGTACTACAAAAGCTTGCGCCTTTTCATGAGCGAGGAGTCCTTACTTTCTAGAGCTGATGCTAAAGTGAAGGAGTTGCGACATTCAATTGATGTTCTAAAGGCTGAAAGTGAACAATTAGAGAAGAGGGCATCAAATGCTGAAAAAGAATTCATACGGGGGAGGAAAAAACTCAGACAAACGGGGAAGCTAATTCAAAGTGCGATTGGAACAGGTTATAAGATTGAAAGACAAGCAATAGGTTTAAAAGATATTATAGGAGAACTTCCTAGAAGTGAAGCATCTATGTTCCGGGACCAAGTTACAAAATTGGCTAAAGAGGCAAAGGAAGAAAGGACTGCCTTATCAAAGGAGGTCACAAAAATTAGCAATCATGGGATCTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

262

Amino Acids

29.01

Weight (kDa)

7.85

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	100
AccII	CGCG	2 cut(s)	47, 116
AciI	CCGC	2 cut(s)	168, 323
AclWI	GGATC	2 cut(s)	113, 785
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	486, 596, 626
AluBI	AGCT	5 cut(s)	179, 267, 414, 455, 589
AluI	AGCT	5 cut(s)	179, 267, 414, 455, 589
Alw26I	GTCTC	2 cut(s)	11, 149
AlwI	GGATC	2 cut(s)	113, 785
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	356, 359
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	49, 420
AspS9I	GGNCC	3 cut(s)	207, 386, 694
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	38, 349
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	386, 694
BbvI	GCAGC	2 cut(s)	343, 346
BceAI	ACGGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	2 cut(s)	11, 149
BfaI	CTAG	5 cut(s)	83, 183, 264, 450, 669
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	324, 357, 360
BlsI	GCNGC	3 cut(s)	325, 358, 361
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	2 cut(s)	386, 694
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	3 cut(s)	207, 386, 694
BmiI	GGNNCC	2 cut(s)	12, 695
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	3 cut(s)	448, 539, 689
BpuMI	CCSGG	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	2 cut(s)	23, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	586
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	343, 346
Bsh1236I	CGCG	2 cut(s)	47, 116
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	24, 213, 335, 691
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	11, 149
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	105, 185, 777
BspACI	CCGC	2 cut(s)	168, 323
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	585
BspFNI	CGCG	2 cut(s)	47, 116
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	12, 695
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	113, 785
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	3 cut(s)	105, 185, 777
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	147, 518
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	126, 416
BstDEI	CTNAG	2 cut(s)	572, 781
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	2 cut(s)	47, 116
BstHHI	GCGC	2 cut(s)	49, 420
BstKTI	GATC	3 cut(s)	108, 188, 780
BstMAI	GTCTC	2 cut(s)	11, 149
BstMBI	GATC	3 cut(s)	105, 185, 777
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 320, 536, 719
BstSCI	CCNGG	1 cut(s)	690
BstUI	CGCG	2 cut(s)	47, 116
BstV1I	GCAGC	2 cut(s)	343, 346
BstX2I	RGATCY	1 cut(s)	777
BstYI	RGATCY	1 cut(s)	777
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	126, 416
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	2 cut(s)	49, 420
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	207, 386, 694
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	427, 773
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	572, 781
DpnI	GATC	3 cut(s)	107, 187, 779
DpnII	GATC	3 cut(s)	105, 185, 777
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	147, 518
EarI	CTCTTC	2 cut(s)	147, 518
EciI	GGCGGA	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	386, 694
Eco57I	CTGAAG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	548
FaeI	CATG	2 cut(s)	430, 776
FaiI	YATR	8 cut(s)	270, 279, 428, 554, 618, 656, 686, 774
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	2 cut(s)	426, 772
Fnu4HI	GCNGC	3 cut(s)	324, 357, 360
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	324, 357, 360
FspBI	CTAG	5 cut(s)	83, 183, 264, 450, 669
GlaI	GCGC	2 cut(s)	48, 419
GluI	GCNGC	3 cut(s)	324, 357, 360
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	4 cut(s)	24, 213, 335, 691
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	49, 420
Hin1II	CATG	2 cut(s)	430, 776
Hin6I	GCGC	2 cut(s)	47, 418
HinP1I	GCGC	2 cut(s)	47, 418
HindIII	AAGCTT	2 cut(s)	177, 412
HinfI	GANTC	4 cut(s)	56, 202, 242, 437
HpaII	CCGG	4 cut(s)	24, 213, 335, 691
HphI	GGTGA	2 cut(s)	38, 349
Hpy166II	GTNNAC	3 cut(s)	136, 372, 512
Hpy188I	TCNGA	2 cut(s)	199, 575
Hpy188III	TCNNGA	3 cut(s)	183, 427, 450
Hpy8I	GTNNAC	3 cut(s)	136, 372, 512
Hpy99I	CGWCG	2 cut(s)	10, 396
HpyAV	CCTTC	2 cut(s)	70, 463
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 320, 536, 719
HpyF3I	CTNAG	2 cut(s)	572, 781
Hsp92II	CATG	2 cut(s)	430, 776
HspAI	GCGC	2 cut(s)	47, 418
Kzo9I	GATC	3 cut(s)	105, 185, 777
Lsp1109I	GCAGC	2 cut(s)	343, 346
LweI	GCATC	3 cut(s)	448, 539, 689
MaeI	CTAG	5 cut(s)	83, 183, 264, 450, 669
MaeIII	GTNAC	2 cut(s)	700, 754
MalI	GATC	3 cut(s)	107, 187, 779
MboI	GATC	3 cut(s)	105, 185, 777
MboII	GAAGA	6 cut(s)	34, 164, 263, 310, 535, 740
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	777
MluCI	AATT	6 cut(s)	486, 515, 548, 591, 707, 762
MlyI	GAGTC	3 cut(s)	50, 236, 446
MseI	TTAA	2 cut(s)	303, 644
MspI	CCGG	4 cut(s)	24, 213, 335, 691
MspR9I	CCNGG	1 cut(s)	692
MunI	CAATTG	1 cut(s)	486
MvnI	CGCG	2 cut(s)	47, 116
MwoI	GCNNNNNNNGC	4 cut(s)	176, 320, 536, 719
NciI	CCSGG	1 cut(s)	692
NdeII	GATC	3 cut(s)	105, 185, 777
NlaIII	CATG	2 cut(s)	430, 776
NlaIV	GGNNCC	2 cut(s)	12, 695
NmuCI	GTSAC	1 cut(s)	754
PagI	TCATGA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	690
PkrI	GCNGC	3 cut(s)	325, 358, 361
PleI	GAGTC	3 cut(s)	50, 236, 445
PpsI	GAGTC	3 cut(s)	50, 236, 445
PsiI	TTATAA	1 cut(s)	618
PspN4I	GGNNCC	2 cut(s)	12, 695
PspPI	GGNCC	3 cut(s)	207, 386, 694
PsuI	RGATCY	1 cut(s)	777
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	303, 644
SatI	GCNGC	3 cut(s)	324, 357, 360
Sau3AI	GATC	3 cut(s)	105, 185, 777
Sau96I	GGNCC	3 cut(s)	207, 386, 694
SchI	GAGTC	3 cut(s)	50, 236, 446
ScrFI	CCNGG	1 cut(s)	692
SetI	ASST	9 cut(s)	94, 181, 269, 416, 457, 591, 616, 643, 756
SfaNI	GCATC	3 cut(s)	448, 539, 689
SinI	GGWCC	2 cut(s)	386, 694
Sse9I	AATT	6 cut(s)	486, 515, 548, 591, 707, 762
SsiI	CCGC	2 cut(s)	168, 323
SspMI	CTAG	5 cut(s)	83, 183, 264, 450, 669
StyD4I	CCNGG	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	108, 150, 174
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	6 cut(s)	486, 515, 548, 591, 707, 762
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	303, 644
Tru9I	TTAA	2 cut(s)	303, 644
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	356, 359
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	2 cut(s)	415, 541
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	386, 694
XapI	RAATTY	1 cut(s)	548
XbaI	TCTAGA	2 cut(s)	182, 449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	5 cut(s)	83, 183, 264, 450, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.