Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

46514745 .. 46518006

Gene Structure 3262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGAGGAGGCGAACATGCGCACGGCGAGGGGGCCCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGAGCGGTGGGCCCTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTGCATTCCCATCGCCATGAAATCTGCCGAGCTCGAGGCTAAGCATAGAAAATCGCTACTGAATGTTGGTGGACCAGACAGGTTATCCCGTGTTCAAATGGCTGAGACGGTTGCTGATATAAGGGGATACAACCTCTCATTAATTAAATCTGTATCTGCATCATCGGTTGATCATGGAGTTGTGTCTCCTGCTGACATATCCATGGATATATCTAAGCTAGTTCAGACGCTTGGTATTTCTCCAATTTCATTTGGAAATGGTGTCAGATTGACGCTTGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

9.3

Isoelectric Point (pI)

16.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	21
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	2 cut(s)	42, 75
AcuI	CTGAAG	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	90, 102
AgsI	TTSAA	2 cut(s)	242, 425
AluBI	AGCT	2 cut(s)	178, 364
AluI	AGCT	2 cut(s)	178, 364
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	39, 245, 336
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	4 cut(s)	33, 80, 92, 117
ApaI	GGGCCC	2 cut(s)	37, 84
AseI	ATTAAT	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	22, 111
AspS9I	GGNCC	6 cut(s)	33, 34, 80, 81, 93, 218
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	2 cut(s)	37, 84
BanII	GRGCYC	3 cut(s)	37, 84, 180
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	3 cut(s)	40, 55, 132
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciVI	GTATCC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	39, 245, 336
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	6 cut(s)	33, 34, 80, 81, 93, 218
BmiI	GGNNCC	3 cut(s)	34, 35, 82
BmsI	GCATC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	37, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 102
Bse1I	ACTGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	37, 348
BseLI	CCNNNNNNNGG	2 cut(s)	90, 102
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	2 cut(s)	37, 84
BshFI	GGCC	4 cut(s)	35, 82, 94, 119
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	90, 102
BsmAI	GTCTC	3 cut(s)	39, 245, 336
BsmBI	CGTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	4 cut(s)	35, 82, 94, 119
BsoBI	CYCGRG	1 cut(s)	179
Bsp120I	GGGCCC	2 cut(s)	33, 80
Bsp1286I	GDGCHC	3 cut(s)	37, 84, 180
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	2 cut(s)	42, 75
BspANI	GGCC	4 cut(s)	35, 82, 94, 119
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	34, 35, 82
BspMAI	CTGCAG	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	37, 348
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	186, 249, 360
BstDSI	CCRYGG	2 cut(s)	37, 348
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	22, 111
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	3 cut(s)	39, 245, 336
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	2 cut(s)	37, 84
BstV2I	GAAGAC	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	35, 82, 94, 119
BtgI	CCRYGG	2 cut(s)	37, 348
BtgZI	GCGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	2 cut(s)	22, 111
Cfr13I	GGNCC	6 cut(s)	33, 34, 80, 81, 93, 218
CseI	GACGC	2 cut(s)	382, 427
CviAII	CATG	6 cut(s)	17, 70, 127, 163, 320, 349
CviJI	RGCY	8 cut(s)	35, 82, 94, 119, 178, 185, 248, 364
CviKI_1	RGCY	8 cut(s)	35, 82, 94, 119, 178, 185, 248, 364
DdeI	CTNAG	3 cut(s)	186, 249, 360
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	3 cut(s)	37, 84, 180
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	33, 81
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	3 cut(s)	37, 84, 180
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	6 cut(s)	20, 73, 130, 166, 323, 352
FatI	CATG	6 cut(s)	16, 69, 126, 162, 319, 348
FbaI	TGATCA	1 cut(s)	316
FriOI	GRGCYC	3 cut(s)	37, 84, 180
FspAI	RTGCGCAY	1 cut(s)	21
FspBI	CTAG	1 cut(s)	365
FspI	TGCGCA	1 cut(s)	21
GlaI	GCGC	2 cut(s)	21, 110
HaeIII	GGCC	4 cut(s)	35, 82, 94, 119
HgaI	GACGC	2 cut(s)	382, 427
HhaI	GCGC	2 cut(s)	22, 111
Hin1II	CATG	6 cut(s)	20, 73, 130, 166, 323, 352
Hin6I	GCGC	2 cut(s)	20, 109
HinP1I	GCGC	2 cut(s)	20, 109
HinfI	GANTC	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	134, 372, 413
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	52, 130
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	90, 150, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	186, 249, 360
Hsp92II	CATG	6 cut(s)	20, 73, 130, 166, 323, 352
HspAI	GCGC	2 cut(s)	20, 109
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	37, 76, 88, 211, 234, 348
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	365
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	130
MhlI	GDGCHC	3 cut(s)	37, 84, 180
MluCI	AATT	3 cut(s)	288, 390, 425
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	22, 152, 175, 290
MseI	TTAA	2 cut(s)	287, 291
MslI	CAYNNNNRTG	2 cut(s)	161, 347
Mva1269I	GAATGC	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	6 cut(s)	20, 73, 130, 166, 323, 352
NlaIV	GGNNCC	3 cut(s)	34, 35, 82
NmeAIII	GCCGAG	1 cut(s)	199
NsbI	TGCGCA	1 cut(s)	21
NspI	RCATGY	1 cut(s)	20
PacI	TTAATTAA	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	179
PctI	GAATGC	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	102
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	34, 35, 82
PspOMI	GGGCCC	2 cut(s)	33, 80
PspPI	GGNCC	6 cut(s)	33, 34, 80, 81, 93, 218
PspXI	VCTCGAGB	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	161, 347
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	287, 291
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	6 cut(s)	33, 34, 80, 81, 93, 218
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	3 cut(s)	37, 84, 180
SetI	ASST	5 cut(s)	63, 180, 230, 282, 366
SfaNI	GCATC	1 cut(s)	314
SfcI	CTRYAG	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	161, 347
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	288, 390, 425
SsiI	CCGC	2 cut(s)	42, 75
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	288, 390, 425
Tru1I	TTAA	2 cut(s)	287, 291
Tru9I	TTAA	2 cut(s)	287, 291
TscAI	CASTG	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	179, 384
TspRI	CASTG	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.