Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

26501428 .. 26504888

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1136900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCGTATTTCCGACGAACCGGTTTGTACCGGCCGGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCCGGTCTCCCCAAACATGTCCTAGCGCAGGTCGAAGAACTGGAGAAAGAAATATTGGATGCTAGAGAGAAAATTGAATACTTATGGGTCAAAATGCGGGAACTTTGGTGTAAGTTGGTATTGATTCTTGAATTGACAAGTACTCTTGGGAGGAACTGCAGATCATGCGTTTTATCATTGTCCTGTAGCTTTATATGTGTGGCTGAGATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

96

Amino Acids

10.72

Weight (kDa)

5.39

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AciI	CCGC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	31
AfaI	GTAC	2 cut(s)	28, 214
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	149, 203
AjnI	CCWGG	1 cut(s)	66
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	95, 135
BfmI	CTRYAG	2 cut(s)	229, 256
BfuAI	ACCTGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	2 cut(s)	19, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	2 cut(s)	19, 29
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	117
BseX3I	CGGCCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	33
BshTI	ACCGGT	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	20, 30, 34, 75
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	2 cut(s)	19, 29
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	2 cut(s)	19, 29
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	233
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	2 cut(s)	229, 256
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	19, 29
Csp6I	GTAC	2 cut(s)	27, 213
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	2 cut(s)	89, 237
CviJI	RGCY	5 cut(s)	33, 53, 72, 261, 275
CviKI_1	RGCY	5 cut(s)	33, 53, 72, 261, 275
CviQI	GTAC	2 cut(s)	27, 213
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	2 cut(s)	92, 240
FaiI	YATR	5 cut(s)	90, 157, 238, 266, 268
FatI	CATG	2 cut(s)	88, 236
FauI	CCCGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	95, 135
GlaI	GCGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	4 cut(s)	20, 30, 34, 75
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	92, 240
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	4 cut(s)	20, 30, 34, 75
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	200
Hpy99I	CGWCG	2 cut(s)	17, 59
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	92, 240
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	33, 43, 47, 53, 80, 86, 88, 98, 268
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	95, 135
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	55, 119
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	144, 203
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	1 cut(s)	216
MspI	CCGG	4 cut(s)	20, 30, 34, 75
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	92, 240
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	92
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	196
PinAI	ACCGGT	1 cut(s)	19
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	28, 214
RsaNI	GTAC	2 cut(s)	27, 213
Sau3AI	GATC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	2 cut(s)	105, 263
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	2 cut(s)	229, 256
Sse9I	AATT	2 cut(s)	144, 203
SsiI	CCGC	1 cut(s)	169
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	95, 135
StyD4I	CCNGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	144, 203
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	98
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	2 cut(s)	95, 135
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.