Rroxscaffold_4G00323910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001694
Physical Location & Seq
Reverse (-)
55123070 .. 55125422
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323910.1

Sequence Viewer

Length: 300 bp
ATGAAATCTCCTACGACCTTTTTGGGGACCTCCGGCAAGGTTTTCAGAAAATTTCGGTGGGTGGCTGCAGGTGATAGGATTTCGGCGAAAGTTGGCCGTAATCCGACCGCCCGTGACGGTTCCGCATTGAAGCCACCTCCGCCTCTAGCATTGATGTCGCCTCCACCTCCTCCCTTTCTAATCCTCGGACAAGGGGTTCGAATCCTCGATGAAATGAGATCAAATGTGGAGTTAGTGTCGTGGATGATATGGAGGATGGCAGGATGCTTGTGTAAGTTCAAATTCGGAGAGTGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.95

Weight (kDa)

10.45

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AciI CCGC 3 cut(s) 108, 123, 140
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 50, 281
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 130, 280
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 50, 281
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 28, 121
BmsI GCATC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 249, 261, 269
BseLI CCNNNNNNNGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 3 cut(s) 108, 123, 140
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 28, 121
BspMAI CTGCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 119
BstBI TTCGAA 1 cut(s) 199
BstF5I GGATG 3 cut(s) 249, 261, 269
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 3 cut(s) 249, 261, 269
BveI ACCTGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 27
CviJI RGCY 3 cut(s) 65, 96, 133
CviKI_1 RGCY 3 cut(s) 65, 96, 133
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 27
FaiI YATR 1 cut(s) 250
FaqI GGGAC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 256, 268, 276
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 33
HinfI GANTC 1 cut(s) 201
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 47, 105, 188, 287
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 218
LpnPI CCDG 3 cut(s) 46, 54, 246
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 254
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MluCI AATT 2 cut(s) 50, 281
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 9 cut(s) 40, 147, 153, 171, 177, 180, 194, 215, 246
MspI CCGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 28, 121
NmuCI GTSAC 1 cut(s) 113
NspV TTCGAA 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 28, 121
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
PstI CTGCAG 1 cut(s) 70
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 1 cut(s) 27
SetI ASST 6 cut(s) 20, 32, 42, 73, 139, 169
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 1 cut(s) 27
Sse9I AATT 2 cut(s) 50, 281
SsiI CCGC 3 cut(s) 108, 123, 140
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 199, 207
TasI AATT 2 cut(s) 50, 281
TfiI GAWTC 1 cut(s) 201
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 17, 225
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 50, 281
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.