Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

26858713 .. 26862865

Gene Structure 4153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1138200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGTCGGCGCAGAAACAATCGGCGAATGTGGATCTATTCGATGCGTATTACCGACGAGCCGATTTGGACCCCGATGGCCGGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCCGGTCTCCCCAAACTGGTCCTTGCGCAGCAACCGATCCTTGGTCCTGGTGCTTGGCACATGGCAACCCCAGCTGGAGGAAGGCCACTGAAGCCAGTTGCTCCTTCTCATGCTGAGGAAAAGCAGCAGGCCAATCAGCAGAAACCTAGAGTACCAGAATTGGAGAAACATCTTGTAAATCAACTGAAACTGGATAAAGAAATTTTGGATGCTAGAGAGAAAATTGAATATTTCCGGGTCAAAATGCAGGAACTTGTGAGCTGGCAACCTGGCATCCAAGAAGGAGCTGCTGACTGGGATGAGGTTTGGCATAGCTTTGAAGATGAAGGATTCACTTTTGTCAAGGAGCTCACTCTTGATGTGTCAAATGTCTTGGCACCTCCAAAACAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

172

Amino Acids

19.16

Weight (kDa)

5.41

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	42, 151
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	81, 136, 161, 197
AgsI	TTSAA	2 cut(s)	347, 440
AjnI	CCWGG	3 cut(s)	114, 166, 388
AluBI	AGCT	5 cut(s)	194, 381, 407, 435, 469
AluI	AGCT	5 cut(s)	194, 381, 407, 435, 469
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	42, 151
AoxI	GGCC	3 cut(s)	79, 203, 249
ApeKI	GCWGC	3 cut(s)	148, 244, 407
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	13, 148
AspS9I	GGNCC	3 cut(s)	70, 139, 164
AsuC2I	CCSGG	1 cut(s)	356
AvaII	GGWCC	3 cut(s)	70, 139, 164
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	2 cut(s)	122, 471
Bbv12I	GWGCWC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	160, 256, 394
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	3 cut(s)	116, 168, 390
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	267, 333
BisI	GCNGC	3 cut(s)	149, 245, 408
BlsI	GCNGC	3 cut(s)	150, 246, 409
Bme1390I	CCNGG	4 cut(s)	116, 168, 356, 390
Bme18I	GGWCC	3 cut(s)	70, 139, 164
BmgT120I	GGNCC	3 cut(s)	70, 139, 164
BmiI	GGNNCC	3 cut(s)	72, 121, 498
BmrFI	CCNGG	4 cut(s)	116, 168, 356, 390
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	3 cut(s)	34, 319, 402
BmuI	ACTGGG	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	115, 160
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 136, 161, 197
Bse1I	ACTGG	4 cut(s)	141, 215, 315, 419
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	3 cut(s)	116, 168, 390
BseDI	CCNNGG	2 cut(s)	115, 160
BseGI	GGATG	3 cut(s)	334, 393, 424
BseLI	CCNNNNNNNGG	4 cut(s)	81, 136, 161, 197
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	4 cut(s)	141, 215, 315, 419
BseXI	GCAGC	3 cut(s)	160, 256, 394
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	81, 205, 251
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	82, 123, 355
BslI	CCNNNNNNNGG	4 cut(s)	81, 136, 161, 197
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	81, 205, 251
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	122, 471
Bsp143I	GATC	2 cut(s)	34, 156
BspANI	GGCC	3 cut(s)	81, 205, 251
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	72, 121, 498
BspPI	GGATC	2 cut(s)	42, 151
BspT107I	GGYRCC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	4 cut(s)	141, 215, 315, 419
BssECI	CCNNGG	2 cut(s)	115, 160
BssMI	GATC	2 cut(s)	34, 156
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	3 cut(s)	116, 168, 390
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	249, 383
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	334, 393, 424
BstHHI	GCGC	2 cut(s)	13, 148
BstKTI	GATC	2 cut(s)	37, 159
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	34, 156
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 211
BstNI	CCWGG	3 cut(s)	116, 168, 390
BstSCI	CCNGG	4 cut(s)	114, 166, 354, 388
BstV1I	GCAGC	3 cut(s)	160, 256, 394
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	81, 205, 251
BtsCI	GGATG	3 cut(s)	334, 393, 424
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	249, 383
CfoI	GCGC	2 cut(s)	13, 148
Cfr13I	GGNCC	3 cut(s)	70, 139, 164
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	181, 230
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	36, 158
DpnII	GATC	2 cut(s)	34, 156
EaeI	YGGCCR	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	122, 471
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	3 cut(s)	70, 139, 164
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	114, 166, 388
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	2 cut(s)	122, 471
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	184, 233
FaiI	YATR	3 cut(s)	182, 231, 432
FatI	CATG	2 cut(s)	180, 229
Fnu4HI	GCNGC	3 cut(s)	149, 245, 408
FokI	GGATG	3 cut(s)	341, 380, 431
FriOI	GRGCYC	2 cut(s)	122, 471
Fsp4HI	GCNGC	3 cut(s)	149, 245, 408
FspBI	CTAG	2 cut(s)	267, 333
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	2 cut(s)	12, 147
GluI	GCNGC	3 cut(s)	149, 245, 408
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	81, 205, 251
HapII	CCGG	3 cut(s)	82, 123, 355
HhaI	GCGC	2 cut(s)	13, 148
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	184, 233
Hin6I	GCGC	2 cut(s)	11, 146
HinP1I	GCGC	2 cut(s)	11, 146
HinfI	GANTC	1 cut(s)	450
HpaII	CCGG	3 cut(s)	82, 123, 355
Hpy188III	TCNNGA	1 cut(s)	476
Hpy99I	CGWCG	3 cut(s)	10, 60, 107
HpyAV	CCTTC	4 cut(s)	195, 234, 395, 440
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 211
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	184, 233
HspAI	GCGC	2 cut(s)	11, 146
Kzo9I	GATC	2 cut(s)	34, 156
LmnI	GCTCC	4 cut(s)	125, 226, 404, 466
Lsp1109I	GCAGC	3 cut(s)	160, 256, 394
LweI	GCATC	3 cut(s)	34, 319, 402
MaeI	CTAG	2 cut(s)	267, 333
MalI	GATC	2 cut(s)	36, 158
MboI	GATC	2 cut(s)	34, 156
MboII	GAAGA	2 cut(s)	103, 452
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	122, 471
MluCI	AATT	3 cut(s)	278, 321, 342
MnlI	CCTC	4 cut(s)	191, 229, 415, 510
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	82, 123, 355
MspR9I	CCNGG	4 cut(s)	116, 168, 356, 390
MvaI	CCWGG	3 cut(s)	116, 168, 390
MwoI	GCNNNNNNNGC	2 cut(s)	191, 211
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	34, 156
NlaIII	CATG	2 cut(s)	184, 233
NlaIV	GGNNCC	3 cut(s)	72, 121, 498
NsbI	TGCGCA	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	150, 246, 409
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	3 cut(s)	114, 166, 388
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	114, 166, 388
PspN4I	GGNNCC	3 cut(s)	72, 121, 498
PspPI	GGNCC	3 cut(s)	70, 139, 164
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	471
SatI	GCNGC	3 cut(s)	149, 245, 408
Sau3AI	GATC	2 cut(s)	34, 156
Sau96I	GGNCC	3 cut(s)	70, 139, 164
ScrFI	CCNGG	4 cut(s)	116, 168, 356, 390
SduI	GDGCHC	2 cut(s)	122, 471
SetI	ASST	9 cut(s)	196, 268, 383, 391, 409, 426, 437, 471, 502
SfaNI	GCATC	3 cut(s)	34, 319, 402
SinI	GGWCC	3 cut(s)	70, 139, 164
Sse9I	AATT	3 cut(s)	278, 321, 342
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	267, 333
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	4 cut(s)	114, 166, 354, 388
StyI	CCWWGG	1 cut(s)	160
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	278, 321, 342
TfiI	GAWTC	1 cut(s)	450
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	3 cut(s)	148, 244, 407
TspDTI	ATGAA	2 cut(s)	111, 459
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	3 cut(s)	70, 139, 164
XapI	RAATTY	1 cut(s)	321
XspI	CTAG	2 cut(s)	267, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.