Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001303.1

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

56743 .. 59498

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001303.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgtctattgggggcaataaactttccggtgaggttttcagaaaagtccgatgggcagcggccggtgatcagaatcctgtgaaagttggccggaatccagccgccggtgaccggattccggtcaccccgatgaggttttcaaaaaagtccgatgggcagcggccgagacaaatggcttaccttaggagagcggatttggacgaagatggcaggatcagaggagctgaggcagtcgcttcctttcagggcgccaatttgtccaaactagttcttgctcaagttcgtcatcctttggctttaatcttcaaatttgatttgtttctcaacatgtggtattgtggattattgagcttgaatatcggaatatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

10.46

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	4 cut(s)	59, 102, 160, 191
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	3 cut(s)	60, 88, 161
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	249
AfiI	CCNNNNNNNGG	4 cut(s)	104, 111, 118, 132
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	141, 307, 355
AhlI	ACTAGT	1 cut(s)	265
AluBI	AGCT	2 cut(s)	224, 351
AluI	AGCT	2 cut(s)	224, 351
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	3 cut(s)	60, 88, 161
ApeKI	GCWGC	2 cut(s)	56, 157
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	251
AsuHPI	GGTGA	4 cut(s)	41, 77, 115, 119
AxyI	CCTNAGG	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	68, 169
BccI	CCATC	3 cut(s)	45, 146, 200
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	160
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	5 cut(s)	57, 60, 102, 158, 161
BlsI	GCNGC	5 cut(s)	58, 61, 103, 159, 162
BmiI	GGNNCC	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	249
BsaWI	WCCGGW	3 cut(s)	26, 111, 118
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 111, 118, 132
Bse118I	RCCGGY	2 cut(s)	62, 104
Bse21I	CCTNAGG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	4 cut(s)	104, 111, 118, 132
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	234
BseX3I	CGGCCG	2 cut(s)	60, 161
BseXI	GCAGC	2 cut(s)	68, 169
Bsh1285I	CGRYCG	2 cut(s)	63, 164
BshFI	GGCC	3 cut(s)	62, 90, 163
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	63, 164
BsiSI	CCGG	6 cut(s)	27, 63, 91, 105, 112, 119
BslI	CCNNNNNNNGG	4 cut(s)	104, 111, 118, 132
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	62, 90, 163
Bsp143I	GATC	2 cut(s)	67, 213
BspACI	CCGC	4 cut(s)	59, 102, 160, 191
BspANI	GGCC	3 cut(s)	62, 90, 163
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	62, 104
BssAI	RCCGGY	2 cut(s)	62, 104
BssMI	GATC	2 cut(s)	67, 213
BssNI	GRCGYC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	182, 225
BstEII	GGTNACC	2 cut(s)	107, 121
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	70, 216
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	67, 213
BstMCI	CGRYCG	2 cut(s)	63, 164
BstNSI	RCATGY	1 cut(s)	331
BstPI	GGTNACC	2 cut(s)	107, 121
BstV1I	GCAGC	2 cut(s)	68, 169
BstZI	CGGCCG	2 cut(s)	60, 161
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	62, 90, 163
BtsCI	GGATG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	2 cut(s)	62, 104
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	8 cut(s)	62, 90, 101, 163, 176, 224, 296, 351
CviKI_1	RGCY	8 cut(s)	62, 90, 101, 163, 176, 224, 296, 351
DdeI	CTNAG	2 cut(s)	182, 225
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	2 cut(s)	69, 215
DpnII	GATC	2 cut(s)	67, 213
EaeI	YGGCCR	3 cut(s)	60, 88, 161
EagI	CGGCCG	2 cut(s)	60, 161
EclXI	CGGCCG	2 cut(s)	60, 161
Eco52I	CGGCCG	2 cut(s)	60, 161
Eco81I	CCTNAGG	1 cut(s)	182
Eco91I	GGTNACC	2 cut(s)	107, 121
EcoO65I	GGTNACC	2 cut(s)	107, 121
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
FaeI	CATG	1 cut(s)	331
FaiI	YATR	2 cut(s)	329, 370
FatI	CATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	5 cut(s)	57, 60, 102, 158, 161
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	5 cut(s)	57, 60, 102, 158, 161
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	5 cut(s)	57, 60, 102, 158, 161
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	62, 90, 163
HapII	CCGG	6 cut(s)	27, 63, 91, 105, 112, 119
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	73, 94, 115
HpaII	CCGG	6 cut(s)	27, 63, 91, 105, 112, 119
HphI	GGTGA	4 cut(s)	41, 77, 115, 119
Hpy188I	TCNGA	6 cut(s)	41, 50, 72, 151, 218, 362
HpyF3I	CTNAG	2 cut(s)	182, 225
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	1 cut(s)	249
KasI	GGCGCC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 213
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	68, 169
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	107, 121
MalI	GATC	2 cut(s)	69, 215
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	2 cut(s)	67, 213
MboII	GAAGA	2 cut(s)	215, 295
MluCI	AATT	2 cut(s)	253, 308
Mly113I	GGCGCC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	25, 126, 212, 220
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	2 cut(s)	59, 160
MspI	CCGG	6 cut(s)	27, 63, 91, 105, 112, 119
NarI	GGCGCC	1 cut(s)	249
NdeII	GATC	2 cut(s)	67, 213
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	107, 121
NspI	RCATGY	1 cut(s)	331
PciI	ACATGT	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	73, 94, 115
PkrI	GCNGC	5 cut(s)	58, 61, 103, 159, 162
PluTI	GGCGCC	1 cut(s)	252
PscI	ACATGT	1 cut(s)	327
PspEI	GGTNACC	2 cut(s)	107, 121
PspN4I	GGNNCC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	5 cut(s)	57, 60, 102, 158, 161
Sau3AI	GATC	2 cut(s)	67, 213
SetI	ASST	5 cut(s)	36, 137, 183, 226, 353
SfoI	GGCGCC	1 cut(s)	250
SgrAI	CRCCGGYG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	2 cut(s)	253, 308
SsiI	CCGC	4 cut(s)	59, 102, 160, 191
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	266
TasI	AATT	2 cut(s)	253, 308
TauI	GCSGC	3 cut(s)	62, 104, 163
TfiI	GAWTC	3 cut(s)	73, 94, 115
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	107, 121
TseI	GCWGC	2 cut(s)	56, 157
Tsp45I	GTSAC	2 cut(s)	107, 121
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.