Rh7DG400500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001694
Physical Location & Seq
Reverse (-)
55066097 .. 55066396
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG400500.1

Sequence Viewer

Length: 300 bp
ATGGGCAGGCGTTGGGCTGCGCCAGACGTGGGTGTGCTGTGTTGCACAGGTAGCGGGGCAAGGCTGCCTGATTCTGCAGCGATCTGTGTTGGGATCTGCACTATGGGCAGCATGGGCTGGAGAGGGTGTGCTAGCCGTGTAGGTAGGAGGACGATGGGATGCTGCTATGCCAGCAGGAGAGGGACTAGGCGCGGGTGGAGGATAGATCAAAGGCTGGGAGGCTCTGGTGAGGAGGCTGGATCGAAGGCCGGAATGCAAGCAGTTGGGATCGGTGCTGTAGGTGGTTGGTGTTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.26

Weight (kDa)

9.9

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 54, 192
AclWI GGATC 3 cut(s) 101, 247, 275
AfiI CCNNNNNNNGG 1 cut(s) 29
AjiI CACGTC 1 cut(s) 28
AlwI GGATC 3 cut(s) 101, 247, 275
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 5 cut(s) 17, 64, 77, 108, 162
AspLEI GCGC 2 cut(s) 22, 192
AsuHPI GGTGA 1 cut(s) 239
AsuNHI GCTAGC 1 cut(s) 131
BbvI GCAGC 5 cut(s) 4, 51, 89, 120, 149
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 120
BfaI CTAG 2 cut(s) 132, 186
BfmI CTRYAG 2 cut(s) 75, 276
BisI GCNGC 5 cut(s) 18, 65, 78, 109, 163
BlsI GCNGC 5 cut(s) 19, 66, 79, 110, 164
BmgBI CACGTC 1 cut(s) 28
BmsI GCATC 1 cut(s) 149
BmtI GCTAGC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 5 cut(s) 4, 51, 89, 120, 149
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 5 cut(s) 81, 93, 205, 239, 267
BspACI CCGC 2 cut(s) 54, 192
BspANI GGCC 1 cut(s) 248
BspFNI CGCG 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 3 cut(s) 101, 247, 275
BssMI GATC 5 cut(s) 81, 93, 205, 239, 267
BstC8I GCNNGC 4 cut(s) 8, 133, 172, 258
BstF5I GGATG 1 cut(s) 164
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 22, 192
BstKTI GATC 5 cut(s) 84, 96, 208, 242, 270
BstMBI GATC 5 cut(s) 81, 93, 205, 239, 267
BstMWI GCNNNNNNNGC 4 cut(s) 51, 105, 114, 171
BstSFI CTRYAG 2 cut(s) 75, 276
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 5 cut(s) 4, 51, 89, 120, 149
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 248
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 4 cut(s) 8, 133, 172, 258
CfoI GCGC 2 cut(s) 22, 192
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 17, 64, 117, 135, 214, 222, 236, 248
CviKI_1 RGCY 8 cut(s) 17, 64, 117, 135, 214, 222, 236, 248
DpnI GATC 5 cut(s) 83, 95, 207, 241, 269
DpnII GATC 5 cut(s) 81, 93, 205, 239, 267
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 104, 113, 168
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 111
FauI CCCGC 2 cut(s) 47, 185
Fnu4HI GCNGC 5 cut(s) 18, 65, 78, 109, 163
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 5 cut(s) 18, 65, 78, 109, 163
FspBI CTAG 2 cut(s) 132, 186
GlaI GCGC 2 cut(s) 21, 191
GluI GCNGC 5 cut(s) 18, 65, 78, 109, 163
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 249
HhaI GCGC 2 cut(s) 22, 192
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 2 cut(s) 20, 190
HinP1I GCGC 2 cut(s) 20, 190
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 45, 77, 99, 256, 294
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 105, 114, 171
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 2 cut(s) 20, 190
Kzo9I GATC 5 cut(s) 81, 93, 205, 239, 267
Lsp1109I GCAGC 5 cut(s) 4, 51, 89, 120, 149
LweI GCATC 1 cut(s) 149
MaeI CTAG 2 cut(s) 132, 186
MaeII ACGT 1 cut(s) 27
MalI GATC 5 cut(s) 83, 95, 207, 241, 269
MboI GATC 5 cut(s) 81, 93, 205, 239, 267
MflI RGATCY 1 cut(s) 93
MnlI CCTC 7 cut(s) 116, 141, 173, 192, 212, 223, 226
MspI CCGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 258
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 51, 105, 114, 171
NdeII GATC 5 cut(s) 81, 93, 205, 239, 267
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 115
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 5 cut(s) 19, 66, 79, 110, 164
PspFI CCCAGC 1 cut(s) 214
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 93
SatI GCNGC 5 cut(s) 18, 65, 78, 109, 163
Sau3AI GATC 5 cut(s) 81, 93, 205, 239, 267
SetI ASST 4 cut(s) 30, 52, 145, 283
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 2 cut(s) 75, 276
SsiI CCGC 2 cut(s) 54, 192
SspMI CTAG 2 cut(s) 132, 186
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 242
TfiI GAWTC 1 cut(s) 71
TseI GCWGC 5 cut(s) 17, 64, 77, 108, 162
XspI CTAG 2 cut(s) 132, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.