Rh5AG137900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001694
Physical Location & Seq
Reverse (-)
14229263 .. 14239746
10484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG137900.1

Sequence Viewer

Length: 216 bp
ATGCTTGGCGTTCGCAAGCGGGGTGGTGCTGGGATGGGCAGGCGTTGGGCTGCACAAGACGTGGGTGTGTCGTGGTGCGCAGGCGGCGGGGCAGGCCTGCCGGATTCTGCAGCGATCTGTGTTGGGACAGCGGGTTGGCCGGAGCGGGTTGGCAGGCGTGGCTTAATGCTTCCCATTTGTCAAGAAATTTATGTTTACTTTCTAAGGAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.59

Weight (kDa)

9.88

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 5 cut(s) 19, 84, 87, 131, 145
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 186
AjiI CACGTC 1 cut(s) 61
AoxI GGCC 2 cut(s) 94, 137
ApeKI GCWGC 2 cut(s) 50, 110
ApoI RAATTY 1 cut(s) 186
AspLEI GCGC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 37, 122
BccI CCATC 1 cut(s) 28
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 3 cut(s) 51, 85, 111
BlsI GCNGC 3 cut(s) 52, 86, 112
BmgBI CACGTC 1 cut(s) 61
BseGI GGATG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 37, 122
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 96, 139
BsiSI CCGG 2 cut(s) 101, 140
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 96, 139
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 5 cut(s) 19, 84, 87, 131, 145
BspANI GGCC 2 cut(s) 96, 139
BspMAI CTGCAG 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 145
BssMI GATC 1 cut(s) 114
BstC8I GCNNGC 6 cut(s) 17, 41, 82, 94, 98, 155
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 3 cut(s) 84, 93, 159
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 37, 122
BsuRI GGCC 2 cut(s) 96, 139
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 6 cut(s) 17, 41, 82, 94, 98, 155
CfoI GCGC 1 cut(s) 80
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviJI RGCY 4 cut(s) 50, 96, 139, 162
CviKI_1 RGCY 4 cut(s) 50, 96, 139, 162
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 96
FaiI YATR 1 cut(s) 192
FaqI GGGAC 1 cut(s) 139
FauI CCCGC 4 cut(s) 12, 80, 124, 138
Fnu4HI GCNGC 3 cut(s) 51, 85, 111
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 51, 85, 111
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 1 cut(s) 79
GluI GCNGC 3 cut(s) 51, 85, 111
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 96, 139
HapII CCGG 2 cut(s) 101, 140
HhaI GCGC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 101, 140
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 53, 110
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 93, 159
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 15, 25, 66, 78, 110, 114, 139, 153
Lsp1109I GCAGC 2 cut(s) 37, 122
MaeII ACGT 1 cut(s) 60
MalI GATC 1 cut(s) 116
MbiI CCGCTC 1 cut(s) 145
MboI GATC 1 cut(s) 114
MluCI AATT 1 cut(s) 186
MnlI CCTC 1 cut(s) 201
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 2 cut(s) 101, 140
MwoI GCNNNNNNNGC 3 cut(s) 84, 93, 159
NdeII GATC 1 cut(s) 114
NsbI TGCGCA 1 cut(s) 79
PceI AGGCCT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 52, 86, 112
PspFI CCCAGC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 3 cut(s) 51, 85, 111
Sau3AI GATC 1 cut(s) 114
SetI ASST 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 186
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 5 cut(s) 19, 84, 87, 131, 145
StuI AGGCCT 1 cut(s) 96
TaiI ACGT 1 cut(s) 63
TasI AATT 1 cut(s) 186
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 2 cut(s) 50, 110
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.