Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

18544076 .. 18546776

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCAGGCGGTTGGGATCGGTGCTGCAGATGACTCCGGTGAAGGGGAGGCGGTGCTGCAGTTACTTATGGGCTGGCGGAGACGAAGGACGATCTGGTCTTTTGTTGTCGGCGGTTTTGAATTTTTATGGGTCTTTGGGTATTTTGCTGTGAGGAAGAGAAGACATGCGCTAGCTGCTATATCCTGTCAGTATATAGGCGAATCGAGCTTCAGCTTTGCTGTTCTGTGTGATCAAATTTTGCCATCAACGTCAACGATCGTGAAAGCTTGGTGGGATTTCAATTTGGTTAACTCTTTTCTAAGGCGTCAAATTCTTGAAGCATCAAATGATGAAGAGGTTGTCTTACTCTCAGAGATATTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.77

Weight (kDa)

5.79

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AciI	CCGC	4 cut(s)	8, 50, 76, 111
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	3 cut(s)	119, 234, 309
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	119, 280, 317
AluBI	AGCT	4 cut(s)	173, 207, 213, 266
AluI	AGCT	4 cut(s)	173, 207, 213, 266
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	23, 55, 173
ApoI	RAATTY	3 cut(s)	119, 234, 309
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	10, 42, 160
BccI	CCATC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	24, 56
BisI	GCNGC	3 cut(s)	24, 56, 174
BlsI	GCNGC	3 cut(s)	25, 57, 175
BmsI	GCATC	1 cut(s)	329
BmtI	GCTAGC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	10, 42, 160
Bsh1285I	CGRYCG	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	15, 90, 229, 255
BspACI	CCGC	4 cut(s)	8, 50, 76, 111
BspCNI	CTCAG	1 cut(s)	362
BspMAI	CTGCAG	2 cut(s)	28, 60
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	23
BssMI	GATC	4 cut(s)	15, 90, 229, 255
BssNI	GRCGYC	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	149, 327
BstACI	GRCGYC	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	6, 74, 171
BstDEI	CTNAG	2 cut(s)	299, 349
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	4 cut(s)	18, 93, 232, 258
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	15, 90, 229, 255
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 204
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	2 cut(s)	24, 56
BstV1I	GCAGC	3 cut(s)	10, 42, 160
BstV2I	GAAGAC	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	6, 74, 171
CfoI	GCGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	293
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	72, 173, 207, 213, 266
CviKI_1	RGCY	5 cut(s)	72, 173, 207, 213, 266
DdeI	CTNAG	2 cut(s)	299, 349
DpnI	GATC	4 cut(s)	17, 92, 231, 257
DpnII	GATC	4 cut(s)	15, 90, 229, 255
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	149, 327
EarI	CTCTTC	2 cut(s)	149, 327
EciI	GGCGGA	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	167
FaiI	YATR	6 cut(s)	68, 127, 165, 179, 192, 194
FatI	CATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	24, 56, 174
Fsp4HI	GCNGC	3 cut(s)	24, 56, 174
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	24, 56, 174
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	252, 289
HindII	GTYRAC	2 cut(s)	252, 289
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	2 cut(s)	32, 200
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	252, 289
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	259, 314
Hpy8I	GTNNAC	2 cut(s)	252, 289
HpyAV	CCTTC	2 cut(s)	35, 78
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	3 cut(s)	4, 26, 58
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 204
HpyF3I	CTNAG	2 cut(s)	299, 349
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	15, 90, 229, 255
LpnPI	CCDG	4 cut(s)	49, 58, 79, 196
Lsp1109I	GCAGC	3 cut(s)	10, 42, 160
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	4 cut(s)	17, 92, 231, 257
MboI	GATC	4 cut(s)	15, 90, 229, 255
MboII	GAAGA	3 cut(s)	166, 171, 344
MluCI	AATT	4 cut(s)	119, 234, 280, 309
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	3 cut(s)	40, 144, 328
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	173, 204
NdeII	GATC	4 cut(s)	15, 90, 229, 255
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	167
NspI	RCATGY	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	25, 57, 175
Ple19I	CGATCG	1 cut(s)	258
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PstI	CTGCAG	2 cut(s)	28, 60
PvuI	CGATCG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	24, 56, 174
Sau3AI	GATC	4 cut(s)	15, 90, 229, 255
SchI	GAGTC	1 cut(s)	26
SetI	ASST	7 cut(s)	175, 209, 215, 251, 268, 339, 365
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	24, 56
Sse9I	AATT	4 cut(s)	119, 234, 280, 309
SsiI	CCGC	4 cut(s)	8, 50, 76, 111
SspMI	CTAG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	119, 234, 280, 309
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	3 cut(s)	23, 55, 173
TspDTI	ATGAA	1 cut(s)	345
XapI	RAATTY	3 cut(s)	119, 234, 309
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.