Rh1DG288300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001694
Physical Location & Seq
Reverse (-)
51112267 .. 51116435
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG288300.1

Sequence Viewer

Length: 303 bp
ATGGGCAGGCGTTGGGCTGCGCAAGACGCGGCGGGGCAGGCCTGCCGGATTCTGCAACGATCTGTGTTGGGATCTGCGCTGTGGGCTGCGCGGGTTGGCCGGCGCAGGTGTGCTGGCCGCGTGGGTAGGAGGACGACGGGATGCTGCTGTGCGAGCAGGAGAGGGACTAGGCGCGGGTGGAGGCTAGATCAAAGGCTGGGAGGCTCCGGTGAGGAGGCTGGATCGAAGGCCGGAATGCAGGCGGTTGGGATCGGTGCTGCAGATGACTCCGGTGAAGGGGAGGCGATCATAATTGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.53

Weight (kDa)

11.16

Isoelectric Point (pI)

67.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 96
Acc16I TGCGCA 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 4 cut(s) 29, 91, 120, 174
AciI CCGC 6 cut(s) 29, 32, 91, 118, 174, 242
AclWI GGATC 3 cut(s) 79, 229, 257
AcoI YGGCCR 2 cut(s) 97, 115
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 296
AlwI GGATC 3 cut(s) 79, 229, 257
AoxI GGCC 4 cut(s) 39, 97, 115, 228
ApeKI GCWGC 4 cut(s) 17, 86, 144, 257
AspLEI GCGC 5 cut(s) 22, 79, 91, 105, 174
AsuHPI GGTGA 2 cut(s) 221, 284
BbvI GCAGC 4 cut(s) 4, 73, 131, 244
BfaI CTAG 2 cut(s) 168, 185
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 6 cut(s) 18, 30, 87, 118, 145, 258
BlsI GCNGC 6 cut(s) 19, 31, 88, 119, 146, 259
BmiI GGNNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 131
BsaWI WCCGGW 2 cut(s) 206, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 99
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 4 cut(s) 4, 73, 131, 244
BseYI CCCAGC 1 cut(s) 196
Bsh1236I CGCG 4 cut(s) 29, 91, 120, 174
BshFI GGCC 4 cut(s) 41, 99, 117, 230
BsiSI CCGG 5 cut(s) 46, 100, 207, 231, 270
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 4 cut(s) 41, 99, 117, 230
Bsp143I GATC 6 cut(s) 59, 71, 187, 221, 249, 285
BspACI CCGC 6 cut(s) 29, 32, 91, 118, 174, 242
BspANI GGCC 4 cut(s) 41, 99, 117, 230
BspFNI CGCG 4 cut(s) 29, 91, 120, 174
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 3 cut(s) 79, 229, 257
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 6 cut(s) 59, 71, 187, 221, 249, 285
BstC8I GCNNGC 7 cut(s) 8, 39, 43, 101, 115, 154, 240
BstF5I GGATG 1 cut(s) 146
BstFNI CGCG 4 cut(s) 29, 91, 120, 174
BstHHI GCGC 5 cut(s) 22, 79, 91, 105, 174
BstKTI GATC 6 cut(s) 62, 74, 190, 224, 252, 288
BstMBI GATC 6 cut(s) 59, 71, 187, 221, 249, 285
BstMWI GCNNNNNNNGC 4 cut(s) 26, 38, 83, 153
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 4 cut(s) 29, 91, 120, 174
BstV1I GCAGC 4 cut(s) 4, 73, 131, 244
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 4 cut(s) 41, 99, 117, 230
BtsCI GGATG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 7 cut(s) 8, 39, 43, 101, 115, 154, 240
CfoI GCGC 5 cut(s) 22, 79, 91, 105, 174
Cfr10I RCCGGY 1 cut(s) 99
CseI GACGC 1 cut(s) 35
DpnI GATC 6 cut(s) 61, 73, 189, 223, 251, 287
DpnII GATC 6 cut(s) 59, 71, 187, 221, 249, 285
EaeI YGGCCR 2 cut(s) 97, 115
Eco147I AGGCCT 1 cut(s) 41
FaiI YATR 1 cut(s) 290
FaqI GGGAC 1 cut(s) 178
FauI CCCGC 3 cut(s) 25, 84, 167
Fnu4HI GCNGC 6 cut(s) 18, 30, 87, 118, 145, 258
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 6 cut(s) 18, 30, 87, 118, 145, 258
FspBI CTAG 2 cut(s) 168, 185
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 5 cut(s) 21, 78, 90, 104, 173
GluI GCNGC 6 cut(s) 18, 30, 87, 118, 145, 258
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 4 cut(s) 41, 99, 117, 230
HapII CCGG 5 cut(s) 46, 100, 207, 231, 270
HgaI GACGC 1 cut(s) 35
HhaI GCGC 5 cut(s) 22, 79, 91, 105, 174
Hin6I GCGC 5 cut(s) 20, 77, 89, 103, 172
HinP1I GCGC 5 cut(s) 20, 77, 89, 103, 172
HinfI GANTC 2 cut(s) 49, 266
HpaII CCGG 5 cut(s) 46, 100, 207, 231, 270
HphI GGTGA 2 cut(s) 221, 284
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 220, 269
HpyCH4V TGCA 3 cut(s) 55, 238, 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 38, 83, 153
HspAI GCGC 5 cut(s) 20, 77, 89, 103, 172
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
Kzo9I GATC 6 cut(s) 59, 71, 187, 221, 249, 285
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 4 cut(s) 4, 73, 131, 244
LweI GCATC 1 cut(s) 131
MaeI CTAG 2 cut(s) 168, 185
MalI GATC 6 cut(s) 61, 73, 189, 223, 251, 287
MboI GATC 6 cut(s) 59, 71, 187, 221, 249, 285
MflI RGATCY 1 cut(s) 71
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 7 cut(s) 123, 155, 174, 194, 205, 208, 274
MroNI GCCGGC 1 cut(s) 99
MspI CCGG 5 cut(s) 46, 100, 207, 231, 270
Mva1269I GAATGC 1 cut(s) 240
MvnI CGCG 4 cut(s) 29, 91, 120, 174
MwoI GCNNNNNNNGC 4 cut(s) 26, 38, 83, 153
NaeI GCCGGC 1 cut(s) 101
NdeII GATC 6 cut(s) 59, 71, 187, 221, 249, 285
NgoMIV GCCGGC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 205
NsbI TGCGCA 1 cut(s) 21
PaqCI CACCTGC 1 cut(s) 96
PceI AGGCCT 1 cut(s) 41
PctI GAATGC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 6 cut(s) 19, 31, 88, 119, 146, 259
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 71
SatI GCNGC 6 cut(s) 18, 30, 87, 118, 145, 258
Sau3AI GATC 6 cut(s) 59, 71, 187, 221, 249, 285
SchI GAGTC 1 cut(s) 260
SetI ASST 1 cut(s) 110
SfaNI GCATC 1 cut(s) 131
SfcI CTRYAG 1 cut(s) 258
Sse9I AATT 1 cut(s) 291
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 6 cut(s) 29, 32, 91, 118, 174, 242
SspMI CTAG 2 cut(s) 168, 185
StuI AGGCCT 1 cut(s) 41
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 291
TauI GCSGC 2 cut(s) 32, 120
TfiI GAWTC 1 cut(s) 49
TseI GCWGC 4 cut(s) 17, 86, 144, 257
XspI CTAG 2 cut(s) 168, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.