Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

27977715 .. 27979564

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1148500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCATCGCCGCAGAACCAATCGGCGAATGTGGATCTCTTCGATGGGTATTTCCGACGGGCCGATTTGGACCGCGATGGCCGGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCTCGTCACCCAAACAGGTCCTTGCGCAGAGTGACTACCCATCATGCCACATTATCTTTGATGGAGCGGTTTAGGGAGGGACGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGTTTGATTTATCCAATATTTTTCAACCTGCAAATAATTACTCCAATGCTGGCAATGTAGCCTGGAGACCTGCTTCTTGTATTCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

109

Amino Acids

12.12

Weight (kDa)

9.98

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
Acc36I	ACCTGC	2 cut(s)	271, 313
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	11, 73, 187
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	260, 320
AjnI	CCWGG	2 cut(s)	114, 296
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	60, 79
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	60, 70, 138
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	70, 138
BanII	GRGCYC	1 cut(s)	122
BccI	CCATC	4 cut(s)	38, 71, 168, 175
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	116, 298
BcoDI	GTCTC	1 cut(s)	295
BfuAI	ACCTGC	2 cut(s)	271, 313
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	116, 298
Bme18I	GGWCC	2 cut(s)	70, 138
BmgT120I	GGNCC	3 cut(s)	60, 70, 138
BmrFI	CCNGG	2 cut(s)	116, 298
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	115
Bse3DI	GCAATG	3 cut(s)	100, 235, 295
BseBI	CCWGG	2 cut(s)	116, 298
BseDI	CCNNGG	1 cut(s)	115
BseMI	GCAATG	3 cut(s)	100, 235, 295
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	62, 81
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	62, 81
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	11, 73, 187
BspANI	GGCC	2 cut(s)	62, 81
BspFNI	CGCG	1 cut(s)	75
BspMI	ACCTGC	2 cut(s)	271, 313
BspPI	GGATC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	3 cut(s)	100, 235, 295
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	116, 298
Bst6I	CTCTTC	2 cut(s)	44, 213
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	116, 298
BstSCI	CCNGG	2 cut(s)	114, 296
BstUI	CGCG	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	62, 81
BtgZI	GCGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	2 cut(s)	271, 313
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	60, 70, 138
CseI	GACGC	1 cut(s)	210
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	62, 81, 101, 120, 296
CviKI_1	RGCY	5 cut(s)	62, 81, 101, 120, 296
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	44, 213
EarI	CTCTTC	2 cut(s)	44, 213
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	70, 138
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	114, 296
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	165, 236, 325
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	62, 81
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	56
Hpy99I	CGWCG	2 cut(s)	60, 107
HpyCH4V	TGCA	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	184
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	125, 151
MalI	GATC	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	31, 103, 200
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	190, 216
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	116, 298
MvaI	CCWGG	2 cut(s)	116, 298
MvnI	CGCG	1 cut(s)	75
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	167
NmuCI	GTSAC	2 cut(s)	125, 151
NsbI	TGCGCA	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	114, 296
PspGI	CCWGG	2 cut(s)	114, 296
PspPI	GGNCC	3 cut(s)	60, 70, 138
PspPPI	RGGWCCY	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	34
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	3 cut(s)	60, 70, 138
ScrFI	CCNGG	2 cut(s)	116, 298
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	3 cut(s)	140, 265, 307
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	2 cut(s)	70, 138
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	3 cut(s)	11, 73, 187
SspI	AATATT	1 cut(s)	253
StyD4I	CCNGG	2 cut(s)	114, 296
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	271
TauI	GCSGC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	125, 151
Tsp45I	GTSAC	2 cut(s)	125, 151
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	2 cut(s)	70, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.