Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

46917903 .. 46924303

Gene Structure 6401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTTACCTTAGGAGAGCGGATTTGGACGGAGATGGCAGGATCAGCGGAGCTGAGGCCGTCGCTTCCTTTCAGGGCGCCAATTTGTCCAAACTAGTTATTGCTCAGGCGGCGGGGCAGGGCTGCCGGATTCTGCAGCGATCTGTGTTGGGATCTGCGCTGTGGGCTGCGCGGGTTGGCCGGAGCGGGTGTGCTGGCGGCGTGGGTAGGAGGACGATGGGATGCTGCTGTGCGAGCAGGAGGGGGACTAGGCGCGGGTGGAGGCTAGATCAAAGGCTGGGAGGCTCCGGTGAGGAGGCTGGATCGAAGGCCGGAATGCAGGCGGTTGGGATTGGTGCTGCAGATGACTCCAGTGAAGGGGAGGTGGTGCTACAGTTCGCTGGGCGGTGCTGCAGTTCCTTATGGGTTGGCGGGGACGAAGGACGATCTGGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

145

Amino Acids

14.74

Weight (kDa)

9.26

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	2 cut(s)	20, 186
AccII	CGCG	2 cut(s)	172, 255
AclWI	GGATC	3 cut(s)	50, 160, 310
AcoI	YGGCCR	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	357
AhlI	ACTAGT	1 cut(s)	94
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	3 cut(s)	50, 160, 310
AoxI	GGCC	3 cut(s)	57, 178, 309
ApeKI	GCWGC	6 cut(s)	123, 136, 167, 225, 338, 390
AspLEI	GCGC	4 cut(s)	80, 160, 172, 255
AsuHPI	GGTGA	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	110, 148, 154, 212, 325, 377
BccI	CCATC	2 cut(s)	29, 211
BceAI	ACGGC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	3 cut(s)	95, 249, 266
BfmI	CTRYAG	4 cut(s)	134, 339, 371, 391
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	8 cut(s)	111, 124, 137, 168, 199, 226, 339, 391
BlsI	GCNGC	8 cut(s)	112, 125, 138, 169, 200, 227, 340, 392
BmiI	GGNNCC	2 cut(s)	79, 286
BmsI	GCATC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	2 cut(s)	54, 105
BsaHI	GRCGYC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	351
Bse21I	CCTNAGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	45, 119
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	6 cut(s)	110, 148, 154, 212, 325, 377
BseYI	CCCAGC	2 cut(s)	277, 380
Bsh1236I	CGCG	2 cut(s)	172, 255
BshFI	GGCC	3 cut(s)	59, 180, 311
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	4 cut(s)	127, 181, 288, 312
BslFI	GGGAC	2 cut(s)	259, 428
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	2 cut(s)	259, 428
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	59, 180, 311
Bsp143I	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
BspANI	GGCC	3 cut(s)	59, 180, 311
BspCNI	CTCAG	2 cut(s)	46, 118
BspFNI	CGCG	2 cut(s)	172, 255
BspLI	GGNNCC	2 cut(s)	79, 286
BspMAI	CTGCAG	3 cut(s)	138, 343, 395
BspPI	GGATC	3 cut(s)	50, 160, 310
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	2 cut(s)	20, 186
BsrI	ACTGG	1 cut(s)	351
BssMI	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	196, 235, 321
BstDEI	CTNAG	3 cut(s)	11, 54, 105
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	2 cut(s)	172, 255
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	4 cut(s)	80, 160, 172, 255
BstKTI	GATC	6 cut(s)	45, 143, 155, 271, 305, 428
BstMBI	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 110, 164, 234
BstSFI	CTRYAG	4 cut(s)	134, 339, 371, 391
BstUI	CGCG	2 cut(s)	172, 255
BstV1I	GCAGC	6 cut(s)	110, 148, 154, 212, 325, 377
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	59, 180, 311
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	196, 235, 321
CfoI	GCGC	4 cut(s)	80, 160, 172, 255
DdeI	CTNAG	3 cut(s)	11, 54, 105
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	6 cut(s)	44, 142, 154, 270, 304, 427
DpnII	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
EaeI	YGGCCR	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	11
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
FaiI	YATR	1 cut(s)	403
FaqI	GGGAC	2 cut(s)	259, 428
FauI	CCCGC	5 cut(s)	106, 165, 179, 248, 404
Fnu4HI	GCNGC	8 cut(s)	111, 124, 137, 168, 199, 226, 339, 391
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	8 cut(s)	111, 124, 137, 168, 199, 226, 339, 391
FspBI	CTAG	3 cut(s)	95, 249, 266
GlaI	GCGC	4 cut(s)	79, 159, 171, 254
GluI	GCNGC	8 cut(s)	111, 124, 137, 168, 199, 226, 339, 391
GsaI	CCCAGC	2 cut(s)	281, 384
GsuI	CTGGAG	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	59, 180, 311
HapII	CCGG	4 cut(s)	127, 181, 288, 312
HhaI	GCGC	4 cut(s)	80, 160, 172, 255
Hin1I	GRCGYC	1 cut(s)	78
Hin6I	GCGC	4 cut(s)	78, 158, 170, 253
HinP1I	GCGC	4 cut(s)	78, 158, 170, 253
HinfI	GANTC	2 cut(s)	130, 347
HpaII	CCGG	4 cut(s)	127, 181, 288, 312
HphI	GGTGA	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	301, 350, 413
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	136, 319, 341, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 110, 164, 234
HpyF3I	CTNAG	3 cut(s)	11, 54, 105
Hsp92I	GRCGYC	1 cut(s)	78
HspAI	GCGC	4 cut(s)	78, 158, 170, 253
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
LmnI	GCTCC	3 cut(s)	50, 183, 290
Lsp1109I	GCAGC	6 cut(s)	110, 148, 154, 212, 325, 377
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	3 cut(s)	95, 249, 266
MalI	GATC	6 cut(s)	44, 142, 154, 270, 304, 427
MbiI	CCGCTC	2 cut(s)	20, 186
MboI	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	1 cut(s)	82
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	8 cut(s)	49, 204, 234, 255, 275, 286, 289, 355
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	4 cut(s)	127, 181, 288, 312
Mva1269I	GAATGC	1 cut(s)	321
MvnI	CGCG	2 cut(s)	172, 255
MwoI	GCNNNNNNNGC	4 cut(s)	45, 110, 164, 234
NarI	GGCGCC	1 cut(s)	78
NdeII	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
NlaIV	GGNNCC	2 cut(s)	79, 286
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	8 cut(s)	112, 125, 138, 169, 200, 227, 340, 392
PleI	GAGTC	1 cut(s)	341
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	341
PspFI	CCCAGC	2 cut(s)	277, 380
PspN4I	GGNNCC	2 cut(s)	79, 286
PstI	CTGCAG	3 cut(s)	138, 343, 395
PsuI	RGATCY	1 cut(s)	152
SatI	GCNGC	8 cut(s)	111, 124, 137, 168, 199, 226, 339, 391
Sau3AI	GATC	6 cut(s)	42, 140, 152, 268, 302, 425
SchI	GAGTC	1 cut(s)	341
SetI	ASST	3 cut(s)	12, 55, 366
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	4 cut(s)	134, 339, 371, 391
SfoI	GGCGCC	1 cut(s)	79
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	1 cut(s)	82
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	3 cut(s)	95, 249, 266
TaaI	ACNGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	82
TauI	GCSGC	2 cut(s)	113, 201
TfiI	GAWTC	1 cut(s)	130
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	6 cut(s)	123, 136, 167, 225, 338, 390
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	358
XspI	CTAG	3 cut(s)	95, 249, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.