Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

28033455 .. 28035247

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1149300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGTCGATGCAGAACCAATCGGCGAATGTGGATCTCTTCAATGCGTATTTCCTACGGGCCGATTTGGACCGCGATGGCCGGATTAGTGGCAATGAAACCGTCGCTCTCTTCCAGGGCTCTGGTCTCCCAAACAGGTCCTTGAGCAGAATGACTACCCATCATGCCACATTATCTTTGATGGAGCGGTTTAGGGAGGGAAGCCCTCTTCCAGCCGTGCTACCAAGCAATGTTATGTTTGATTTATCCAATATTTTTCAACCTGCAAATAATTACTCCAATGCAGGCAATGTAGCCTGGAGACCTGCTTCTGGCTTTCAACAACAGCAACTGATGCCTGGTCTTGGTGCTCGGCACATGGCACCCCCAGCTGGAGGAAGGCCACCGAAGACAGTTGCTCCTTCTCATGCTGAGGAAAAGCAGCAGGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

145

Amino Acids

15.65

Weight (kDa)

9.51

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	271, 313
AccB1I	GGYRCC	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 187
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	311, 344, 371, 374
AgsI	TTSAA	3 cut(s)	43, 260, 320
AjnI	CCWGG	3 cut(s)	114, 296, 337
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	131, 295
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	4 cut(s)	60, 79, 380, 426
ApeKI	GCWGC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	60, 70, 138
AvaII	GGWCC	2 cut(s)	70, 138
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	352
BbvCI	CCTCAGC	1 cut(s)	411
BccI	CCATC	3 cut(s)	71, 168, 175
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	3 cut(s)	116, 298, 339
BcoDI	GTCTC	2 cut(s)	131, 295
BfuAI	ACCTGC	2 cut(s)	271, 313
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	3 cut(s)	116, 298, 339
Bme18I	GGWCC	2 cut(s)	70, 138
BmgT120I	GGNCC	3 cut(s)	60, 70, 138
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	116, 298, 339
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	2 cut(s)	319, 393
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	131, 295
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 344, 371, 374
Bse3DI	GCAATG	3 cut(s)	100, 235, 295
BseBI	CCWGG	3 cut(s)	116, 298, 339
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	311, 344, 371, 374
BseMI	GCAATG	3 cut(s)	100, 235, 295
BseMII	CTCAG	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	62, 81, 382, 428
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	311, 344, 371, 374
BsmAI	GTCTC	2 cut(s)	131, 295
BsnI	GGCC	4 cut(s)	62, 81, 382, 428
Bso31I	GGTCTC	2 cut(s)	131, 295
Bsp1286I	GDGCHC	2 cut(s)	122, 352
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	73, 187
BspANI	GGCC	4 cut(s)	62, 81, 382, 428
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	2 cut(s)	271, 313
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	2 cut(s)	131, 295
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	3 cut(s)	100, 235, 295
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	116, 298, 339
Bst4CI	ACNGT	2 cut(s)	103, 394
Bst6I	CTCTTC	3 cut(s)	44, 116, 213
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	286, 426
BstDEI	CTNAG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	131, 295
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 368
BstNI	CCWGG	3 cut(s)	116, 298, 339
BstSCI	CCNGG	3 cut(s)	114, 296, 337
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	62, 81, 382, 428
BtgZI	GCGATG	1 cut(s)	90
BveI	ACCTGC	2 cut(s)	271, 313
Cac8I	GCNNGC	2 cut(s)	286, 426
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	60, 70, 138
CviAII	CATG	3 cut(s)	164, 358, 407
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	3 cut(s)	44, 116, 213
EarI	CTCTTC	3 cut(s)	44, 116, 213
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	2 cut(s)	131, 295
Eco47I	GGWCC	2 cut(s)	70, 138
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	114, 296, 337
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	167, 361, 410
FaiI	YATR	4 cut(s)	165, 236, 359, 408
FatI	CATG	3 cut(s)	163, 357, 406
Fnu4HI	GCNGC	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	2 cut(s)	319, 393
HaeIII	GGCC	4 cut(s)	62, 81, 382, 428
HapII	CCGG	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	167, 361, 410
HpaII	CCGG	1 cut(s)	82
Hpy99I	CGWCG	2 cut(s)	10, 107
HpyAV	CCTTC	2 cut(s)	372, 411
HpyCH4III	ACNGT	2 cut(s)	103, 394
HpyCH4V	TGCA	3 cut(s)	13, 266, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 368
HpyF3I	CTNAG	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	167, 361, 410
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	184, 403
LweI	GCATC	1 cut(s)	324
MalI	GATC	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	1 cut(s)	34
MboII	GAAGA	4 cut(s)	31, 103, 200, 400
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	122, 352
MluCI	AATT	2 cut(s)	271, 430
MnlI	CCTC	4 cut(s)	190, 216, 368, 406
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	3 cut(s)	116, 298, 339
MvaI	CCWGG	3 cut(s)	116, 298, 339
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	334, 368
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	167, 361, 410
NlaIV	GGNNCC	1 cut(s)	363
NmeAIII	GCCGAG	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	423
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	114, 296, 337
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	114, 296, 337
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	3 cut(s)	60, 70, 138
PspPPI	RGGWCCY	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	371
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	3 cut(s)	60, 70, 138
ScrFI	CCNGG	3 cut(s)	116, 298, 339
SduI	GDGCHC	2 cut(s)	122, 352
SetI	ASST	4 cut(s)	140, 265, 307, 373
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	2 cut(s)	70, 138
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	271, 430
SsiI	CCGC	2 cut(s)	73, 187
SspI	AATATT	1 cut(s)	253
StyD4I	CCNGG	3 cut(s)	114, 296, 337
TaaI	ACNGT	2 cut(s)	103, 394
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	271, 430
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	70, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.