Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Reverse (-)

59403978 .. 59404610

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCAGGCGGTTGGGATCGGTGCTGCAGATGACTCCGGTGAAGGGGAGGCGGTGCTGCAGTTACTTATGGGCTGGCGGAGACGAAGGACGATCTGGTGGGTAGGACGTCGGGAATTTTTTTTTTTTTTTTTTTTTAATTTTGATGGTCTACTGGGGGGCAGTAGACACATTATTGGCCCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

7.02

Weight (kDa)

9.1

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	109
AccI	GTMKAC	2 cut(s)	148, 163
AciI	CCGC	3 cut(s)	8, 50, 76
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	23, 55
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	10, 42
BccI	CCATC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	2 cut(s)	24, 56
BisI	GCNGC	2 cut(s)	24, 56
BlsI	GCNGC	2 cut(s)	25, 57
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	178
BmrI	ACTGGG	2 cut(s)	161, 175
BmuI	ACTGGG	2 cut(s)	161, 175
BsaHI	GRCGYC	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	156, 181
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	156, 181
BseXI	GCAGC	2 cut(s)	10, 42
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	15, 90
BspACI	CCGC	3 cut(s)	8, 50, 76
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	2 cut(s)	28, 60
BspPI	GGATC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	156, 181
BssMI	GATC	2 cut(s)	15, 90
BssNI	GRCGYC	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	6, 74
BstKTI	GATC	2 cut(s)	18, 93
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	15, 90
BstSFI	CTRYAG	2 cut(s)	24, 56
BstV1I	GCAGC	2 cut(s)	10, 42
BsuRI	GGCC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	6, 74
Cfr13I	GGNCC	1 cut(s)	176
CviJI	RGCY	2 cut(s)	72, 177
CviKI_1	RGCY	2 cut(s)	72, 177
DpnI	GATC	2 cut(s)	17, 92
DpnII	GATC	2 cut(s)	15, 90
EciI	GGCGGA	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	73
FaiI	YATR	1 cut(s)	68
FblI	GTMKAC	2 cut(s)	148, 163
Fnu4HI	GCNGC	2 cut(s)	24, 56
Fsp4HI	GCNGC	2 cut(s)	24, 56
GluI	GCNGC	2 cut(s)	24, 56
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	149, 164
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	149, 164
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	35, 78
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	4, 26, 58
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	15, 90
LpnPI	CCDG	4 cut(s)	49, 58, 79, 137
Lsp1109I	GCAGC	2 cut(s)	10, 42
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	2 cut(s)	17, 92
MboI	GATC	2 cut(s)	15, 90
MluCI	AATT	2 cut(s)	113, 136
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	15, 90
NlaIV	GGNNCC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	25, 57
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	2 cut(s)	28, 60
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	24, 56
Sau3AI	GATC	2 cut(s)	15, 90
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	26
SetI	ASST	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	24, 56
SgeI	CNNG	6 cut(s)	17, 48, 85, 106, 122, 164
Sse9I	AATT	2 cut(s)	113, 136
SsiI	CCGC	3 cut(s)	8, 50, 76
TaiI	ACGT	1 cut(s)	109
TasI	AATT	2 cut(s)	113, 136
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseI	GCWGC	2 cut(s)	23, 55
XapI	RAATTY	1 cut(s)	113
XmiI	GTMKAC	2 cut(s)	148, 163
ZraI	GACGTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.