Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

4727306 .. 4727944

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG026000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCTTACCTTAGGAGAGCGGATTTGGACGGAGATGGCAGGATCAGCGGAGCTGAGGCCGTCGCTTCCTTTCAGGGCGCCAATTTGCCCAAACTAGTTCTTGCTCAGTTCGACTCTGTTTTGGTGCTTGTTTCTGCATTATGTCTAGAACATCATGATCTTGTGCTTTCAATATTTGACAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

62

Amino Acids

6.67

Weight (kDa)

4.64

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	20
AciI	CCGC	2 cut(s)	20, 48
AclWI	GGATC	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	171
AhlI	ACTAGT	1 cut(s)	94
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	2 cut(s)	95, 146
BfoI	RGCGCY	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	78
Bse21I	CCTNAGG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	45, 119
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	42, 157
BspACI	CCGC	2 cut(s)	20, 48
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	46, 118
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	20
BssMI	GATC	2 cut(s)	42, 157
BssNI	GRCGYC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	11, 54, 105
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	45, 160
BstMBI	GATC	2 cut(s)	42, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	59
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	3 cut(s)	5, 53, 59
CviKI_1	RGCY	3 cut(s)	5, 53, 59
DdeI	CTNAG	3 cut(s)	11, 54, 105
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	2 cut(s)	44, 159
DpnII	GATC	2 cut(s)	42, 157
Eco81I	CCTNAGG	1 cut(s)	11
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	142, 156
FatI	CATG	1 cut(s)	154
FspBI	CTAG	2 cut(s)	95, 146
GlaI	GCGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	146, 155
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	3 cut(s)	11, 54, 105
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	78
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	42, 157
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	2 cut(s)	25, 59
MaeI	CTAG	2 cut(s)	95, 146
MalI	GATC	2 cut(s)	44, 159
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	42, 157
MluCI	AATT	1 cut(s)	82
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	78
NdeII	GATC	2 cut(s)	42, 157
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	154
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	42, 157
SchI	GAGTC	1 cut(s)	107
SetI	ASST	2 cut(s)	12, 55
SfoI	GGCGCC	1 cut(s)	79
SgeI	CNNG	8 cut(s)	52, 86, 107, 113, 140, 158, 167, 173
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	20, 48
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	2 cut(s)	174, 184
SspMI	CTAG	2 cut(s)	95, 146
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	45
XbaI	TCTAGA	1 cut(s)	145
XspI	CTAG	2 cut(s)	95, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.