RchiOBHm_Chr4g0392331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001694
Physical Location & Seq
Reverse (-)
7760805 .. 7760954
150 bp
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UTR
Exon/CDS
Intron
PRQ36509

Sequence Viewer

Length: 150 bp
ATGGGCAGGCGTTGGGCTGCGCAAGACGTGGGTGTGCTGTGGTGCGCAGGCGGCGGGGCAGGCCTGCCGGATTCTGCAGTGATCTGTGTTGGGATCTGCGCTGTGGGCTGCGCGGGTTGGCCGGCAAGGGTGTGCTCGCCGAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

4.79

Weight (kDa)

7.61

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 21, 46
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 51, 54, 113
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 119
AjiI CACGTC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 137
AlwI GGATC 1 cut(s) 101
AoxI GGCC 2 cut(s) 61, 119
ApeKI GCWGC 2 cut(s) 17, 108
AspLEI GCGC 4 cut(s) 22, 47, 101, 113
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 4, 95
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 3 cut(s) 18, 52, 109
BlsI GCNGC 3 cut(s) 19, 53, 110
BmgBI CACGTC 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 121
BseXI GCAGC 2 cut(s) 4, 95
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 63, 121
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 68, 122
BsnI GGCC 2 cut(s) 63, 121
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 81, 93
BspACI CCGC 3 cut(s) 51, 54, 113
BspANI GGCC 2 cut(s) 63, 121
BspFNI CGCG 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssMI GATC 2 cut(s) 81, 93
BstC8I GCNNGC 6 cut(s) 8, 49, 61, 65, 123, 137
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 4 cut(s) 22, 47, 101, 113
BstKTI GATC 2 cut(s) 84, 96
BstMBI GATC 2 cut(s) 81, 93
BstMWI GCNNNNNNNGC 3 cut(s) 51, 60, 105
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 4, 95
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 2 cut(s) 63, 121
BtrI CACGTC 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 6 cut(s) 8, 49, 61, 65, 123, 137
CfoI GCGC 4 cut(s) 22, 47, 101, 113
Cfr10I RCCGGY 1 cut(s) 121
CviJI RGCY 4 cut(s) 17, 63, 108, 121
CviKI_1 RGCY 4 cut(s) 17, 63, 108, 121
DpnI GATC 2 cut(s) 83, 95
DpnII GATC 2 cut(s) 81, 93
EaeI YGGCCR 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 63
FauI CCCGC 2 cut(s) 47, 106
Fnu4HI GCNGC 3 cut(s) 18, 52, 109
Fsp4HI GCNGC 3 cut(s) 18, 52, 109
FspI TGCGCA 2 cut(s) 21, 46
GlaI GCGC 4 cut(s) 21, 46, 100, 112
GluI GCNGC 3 cut(s) 18, 52, 109
HaeIII GGCC 2 cut(s) 63, 121
HapII CCGG 2 cut(s) 68, 122
HhaI GCGC 4 cut(s) 22, 47, 101, 113
Hin6I GCGC 4 cut(s) 20, 45, 99, 111
HinP1I GCGC 4 cut(s) 20, 45, 99, 111
HinfI GANTC 1 cut(s) 71
HpaII CCGG 2 cut(s) 68, 122
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 60, 105
HpySE526I ACGT 1 cut(s) 27
HspAI GCGC 4 cut(s) 20, 45, 99, 111
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 81, 93
LpnPI CCDG 5 cut(s) 33, 45, 77, 81, 135
Lsp1109I GCAGC 2 cut(s) 4, 95
MaeII ACGT 1 cut(s) 27
MalI GATC 2 cut(s) 83, 95
MboI GATC 2 cut(s) 81, 93
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 121
MspI CCGG 2 cut(s) 68, 122
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 51, 60, 105
NaeI GCCGGC 1 cut(s) 123
NdeII GATC 2 cut(s) 81, 93
NgoMIV GCCGGC 1 cut(s) 121
NsbI TGCGCA 2 cut(s) 21, 46
PceI AGGCCT 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 19, 53, 110
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 93
SatI GCNGC 3 cut(s) 18, 52, 109
Sau3AI GATC 2 cut(s) 81, 93
SduI GDGCHC 1 cut(s) 137
SetI ASST 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 75
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 3 cut(s) 51, 54, 113
StuI AGGCCT 1 cut(s) 63
TaiI ACGT 1 cut(s) 30
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 84
TseI GCWGC 2 cut(s) 17, 108
TspRI CASTG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.