Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

27941950 .. 27950809

Gene Structure 8860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1148100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCTAAATGTGCAGTCTGGATTGATAGAATGACTACCCATCATGCCACATTATCTTTGATGGAGCGATTTAGGGAGGGACGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGTTTGATTTATCCAATATTTTTCAACCTGCAAATAATTACTCCAATGCTGGCAATGTAGCGCTTTGTTGTTGTTGTTGTTGTTGTTGCTGGCAATGTTGCCTGGAGACCTGCTTCTGGTATTCATCCATAAAACAAATCACTTTTATATTTAGAAACATGTCTTTCTTTGATGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

6.67

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 233
AcyI	GRCGYC	1 cut(s)	82
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	48, 55, 281
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	179
BfuAI	ACCTGC	2 cut(s)	151, 233
Bme1390I	CCNGG	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	3 cut(s)	115, 175, 215
BseBI	CCWGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	3 cut(s)	115, 175, 215
BsgI	GTGCAG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	215
BspMI	ACCTGC	2 cut(s)	151, 233
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	3 cut(s)	115, 175, 215
BssNI	GRCGYC	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	166, 206
BstF5I	GGATG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	2 cut(s)	151, 233
Cac8I	GCNNGC	2 cut(s)	166, 206
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	1 cut(s)	90
CviAII	CATG	2 cut(s)	44, 274
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	215
Eco47III	AGCGCT	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	47, 277
FaiI	YATR	5 cut(s)	45, 116, 245, 263, 275
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	43, 273
FokI	GGATG	1 cut(s)	226
GlaI	GCGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	179
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	47, 277
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	14, 146
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	47, 277
HspAI	GCGC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	4, 105, 150, 156, 190, 203, 217, 230, 238
MboII	GAAGA	1 cut(s)	80
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	2 cut(s)	70, 96
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
NlaIII	CATG	2 cut(s)	47, 277
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	2 cut(s)	145, 227
Sse9I	AATT	1 cut(s)	151
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	216
TasI	AATT	1 cut(s)	151
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	102
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.