Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

27716310 .. 27717361

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGTCGACGCAGAACCAATCGGCGCATGTGGATCTCTTCGATGCGTATTTCCGACGGGCCGATTTGGACCGCGATGGCCGGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCTGGTCACCCAAACAGGTCCTTTGCGCAGATTGATAGAATGACTACCCATCATGCCACATTATCTTTGATGGAGCGGTTTAGGGAGGGACGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGCTTGATTTAAAAAATATTTTTTATTTATTTATTTTTTTTTTGAATCTAGTGTCTCCGGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

6.9

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 196
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	79
AcyI	GRCGYC	2 cut(s)	5, 211
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	60, 79
AspLEI	GCGC	2 cut(s)	28, 148
AspS9I	GGNCC	3 cut(s)	60, 70, 138
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	70, 138
BanII	GRGCYC	1 cut(s)	122
BccI	CCATC	3 cut(s)	71, 177, 184
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	116, 303
Bme18I	GGWCC	2 cut(s)	70, 138
BmgT120I	GGNCC	3 cut(s)	60, 70, 138
BmrFI	CCNGG	2 cut(s)	116, 303
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	303
BsaHI	GRCGYC	2 cut(s)	5, 211
BsaJI	CCNNGG	1 cut(s)	115
Bse3DI	GCAATG	2 cut(s)	100, 244
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	100, 244
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	62, 81
BsiSI	CCGG	2 cut(s)	82, 302
BslFI	GGGAC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	62, 81
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	73, 196
BspANI	GGCC	2 cut(s)	62, 81
BspFNI	CGCG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	100, 244
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	2 cut(s)	5, 211
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	2 cut(s)	44, 222
BstACI	GRCGYC	2 cut(s)	5, 211
BstEII	GGTNACC	1 cut(s)	125
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	28, 148
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	114, 301
BstUI	CGCG	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	62, 81
BtgZI	GCGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
CfoI	GCGC	2 cut(s)	28, 148
Cfr13I	GGNCC	3 cut(s)	60, 70, 138
CseI	GACGC	2 cut(s)	19, 219
CviAII	CATG	2 cut(s)	29, 173
CviJI	RGCY	4 cut(s)	62, 81, 101, 120
CviKI_1	RGCY	4 cut(s)	62, 81, 101, 120
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	44, 222
EarI	CTCTTC	2 cut(s)	44, 222
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	70, 138
Eco91I	GGTNACC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	32, 176
FaiI	YATR	3 cut(s)	30, 174, 245
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	2 cut(s)	28, 172
FblI	GTMKAC	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	2 cut(s)	27, 147
HaeIII	GGCC	2 cut(s)	62, 81
HapII	CCGG	2 cut(s)	82, 302
HgaI	GACGC	2 cut(s)	19, 219
HhaI	GCGC	2 cut(s)	28, 148
Hin1I	GRCGYC	2 cut(s)	5, 211
Hin1II	CATG	2 cut(s)	32, 176
Hin6I	GCGC	2 cut(s)	26, 146
HinP1I	GCGC	2 cut(s)	26, 146
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	82, 302
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	4 cut(s)	10, 13, 60, 107
Hsp92I	GRCGYC	2 cut(s)	5, 211
Hsp92II	CATG	2 cut(s)	32, 176
HspAI	GCGC	2 cut(s)	26, 146
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	95, 101, 108, 121, 128, 234
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	31, 103, 209
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	199, 225
MseI	TTAA	1 cut(s)	254
MspI	CCGG	2 cut(s)	82, 302
MspR9I	CCNGG	2 cut(s)	116, 303
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	75
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	32, 176
NmuCI	GTSAC	1 cut(s)	125
NsbI	TGCGCA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	60, 70, 138
PspPPI	RGGWCCY	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	34
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	3 cut(s)	60, 70, 138
ScrFI	CCNGG	2 cut(s)	116, 303
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	34
SgrDI	CGTCGACG	1 cut(s)	7
SinI	GGWCC	2 cut(s)	70, 138
SsiI	CCGC	2 cut(s)	73, 196
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	114, 301
TaqI	TCGA	2 cut(s)	8, 42
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	70, 138
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.