Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Reverse (-)

27656518 .. 27658794

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1145300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCGTCGACGCAGAACCAATCGGCGCATGTGGATCTCTTCGACGCGTATTTCCGACGGGCCGATTTGGACCGCGATGGCCAGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCTGGTCTCCCCAAACAGGTCCTTGCGGAGCAACTGATGCCTGGTCCTGGTGCTCGGCACATGGCACCCCCAGCTGGAGGAAGGCCACCGAAGACAGTTGCTCCTTCTCATGCTGAGGAAAAGCAGCAGGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

86

Amino Acids

9.07

Weight (kDa)

6.25

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	2 cut(s)	47, 75
AciI	CCGC	2 cut(s)	73, 146
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	136, 167, 194, 197
AflIII	ACRYGT	1 cut(s)	45
AjnI	CCWGG	3 cut(s)	114, 160, 166
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	4 cut(s)	60, 79, 203, 249
ApeKI	GCWGC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	60, 70, 139, 164
AvaII	GGWCC	3 cut(s)	70, 139, 164
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	175
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	3 cut(s)	116, 162, 168
BcoDI	GTCTC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	3 cut(s)	116, 162, 168
Bme18I	GGWCC	3 cut(s)	70, 139, 164
BmgT120I	GGNCC	4 cut(s)	60, 70, 139, 164
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	3 cut(s)	116, 162, 168
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 167, 194, 197
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	3 cut(s)	116, 162, 168
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	136, 167, 194, 197
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	47, 75
BshFI	GGCC	4 cut(s)	62, 81, 205, 251
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	175
BslI	CCNNNNNNNGG	4 cut(s)	136, 167, 194, 197
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	4 cut(s)	62, 81, 205, 251
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	122, 175
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	73, 146
BspANI	GGCC	4 cut(s)	62, 81, 205, 251
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	47, 75
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	116, 162, 168
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	47, 75
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 191
BstNI	CCWGG	3 cut(s)	116, 162, 168
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	114, 160, 166
BstUI	CGCG	2 cut(s)	47, 75
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	2 cut(s)	89, 122
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	62, 81, 205, 251
BtgZI	GCGATG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	60, 70, 139, 164
CseI	GACGC	2 cut(s)	19, 53
CviAII	CATG	3 cut(s)	29, 181, 230
CviJI	RGCY	7 cut(s)	62, 81, 101, 120, 194, 205, 251
CviKI_1	RGCY	7 cut(s)	62, 81, 101, 120, 194, 205, 251
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	3 cut(s)	70, 139, 164
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	114, 160, 166
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	32, 184, 233
FaiI	YATR	3 cut(s)	30, 182, 231
FatI	CATG	3 cut(s)	28, 180, 229
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	245
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	62, 81, 205, 251
HgaI	GACGC	2 cut(s)	19, 53
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	32, 184, 233
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	5 cut(s)	10, 13, 47, 60, 107
HpyAV	CCTTC	2 cut(s)	195, 234
HpyCH4III	ACNGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 191
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	32, 184, 233
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	148, 226
LweI	GCATC	1 cut(s)	147
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	31, 103, 223
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	122, 175
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	1 cut(s)	253
MluI	ACGCGT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	191, 229
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	116, 162, 168
MvaI	CCWGG	3 cut(s)	116, 162, 168
MvnI	CGCG	2 cut(s)	47, 75
MwoI	GCNNNNNNNGC	2 cut(s)	157, 191
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	32, 184, 233
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	154
NspI	RCATGY	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	114, 160, 166
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	114, 160, 166
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	4 cut(s)	60, 70, 139, 164
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	7
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	4 cut(s)	60, 70, 139, 164
ScrFI	CCNGG	3 cut(s)	116, 162, 168
SduI	GDGCHC	2 cut(s)	122, 175
SetI	ASST	2 cut(s)	141, 196
SfaNI	GCATC	1 cut(s)	147
SgrDI	CGTCGACG	1 cut(s)	7
SinI	GGWCC	3 cut(s)	70, 139, 164
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	73, 146
StyD4I	CCNGG	3 cut(s)	114, 160, 166
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	8, 42
TasI	AATT	1 cut(s)	253
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	111
VpaK11BI	GGWCC	3 cut(s)	70, 139, 164
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.