Rroxscaffold_1G00011090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001694
Physical Location & Seq
Reverse (-)
14105291 .. 14108831
3541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011090.1

Sequence Viewer

Length: 333 bp
ATGGCGGAAGTCACCTACCTCCAAATCCACGACCTTGAAGAAAACCCGGCCTTCGAATCCTGCCTTACTTGTCCTCCAACGACTTCGACCTCTACATCTCCTCCGATCCCGATTTCTCGCCAGCCCGGTTCGTCATCGTCCACCAAGAAGACGATGAAGAGGATGAGAATGGGCGGGGTGGCGCCGGGATGGGCAGGCGTTGGGCTGCGCAAGACGTGGGTTGTGTTGCGCAGCGGTGGGGCGGGGTTGCCGGATTCTGCGGCGATCCGTGTTGGGATCCGCGCCGTGGGCTGCATGGGTTGCCCGGAGCGGGTGTGCTGGTCGCATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.62

Weight (kDa)

9.26

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 209, 230
AccB1I GGYRCC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 1 cut(s) 282
AciI CCGC 7 cut(s) 5, 174, 234, 242, 260, 280, 310
AclWI GGATC 4 cut(s) 100, 259, 271, 284
AcyI GRCGYC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 286, 310
AgsI TTSAA 1 cut(s) 38
AjiI CACGTC 1 cut(s) 216
AlwI GGATC 4 cut(s) 100, 259, 271, 284
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 205, 231, 291
AspLEI GCGC 4 cut(s) 184, 210, 231, 284
AsuC2I CCSGG 4 cut(s) 47, 126, 186, 305
AsuHPI GGTGA 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 54
BamHI GGATCC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 192, 243, 278
BccI CCATC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 269
BcnI CCSGG 4 cut(s) 47, 126, 186, 305
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 4 cut(s) 206, 232, 261, 292
BlsI GCNGC 4 cut(s) 207, 233, 262, 293
Bme1390I CCNGG 4 cut(s) 47, 126, 186, 305
BmgBI CACGTC 1 cut(s) 216
BmiI GGNNCC 2 cut(s) 183, 278
BmrFI CCNGG 4 cut(s) 47, 126, 186, 305
BpiI GAAGAC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 54
BpuMI CCSGG 4 cut(s) 47, 126, 186, 305
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 6 cut(s) 58, 85, 88, 115, 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 310
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 168, 194
BseLI CCNNNNNNNGG 2 cut(s) 286, 310
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 3 cut(s) 192, 243, 278
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 181
BsiSI CCGG 5 cut(s) 47, 126, 185, 251, 305
BslI CCNNNNNNNGG 2 cut(s) 286, 310
BsnI GGCC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 54
Bsp143I GATC 3 cut(s) 105, 264, 276
BspACI CCGC 7 cut(s) 5, 174, 234, 242, 260, 280, 310
BspANI GGCC 1 cut(s) 50
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 183, 278
BspPI GGATC 4 cut(s) 100, 259, 271, 284
BspT104I TTCGAA 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 105, 264, 276
BssNI GRCGYC 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 300
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 122, 196
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 168, 194
BstFNI CGCG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 4 cut(s) 184, 210, 231, 284
BstKTI GATC 3 cut(s) 108, 267, 279
BstMBI GATC 3 cut(s) 105, 264, 276
BstMWI GCNNNNNNNGC 2 cut(s) 288, 300
BstSCI CCNGG 4 cut(s) 45, 124, 184, 303
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 192, 243, 278
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 2 cut(s) 168, 194
Cac8I GCNNGC 2 cut(s) 122, 196
CfoI GCGC 4 cut(s) 184, 210, 231, 284
CviAII CATG 2 cut(s) 295, 326
CviJI RGCY 4 cut(s) 50, 124, 205, 291
CviKI_1 RGCY 4 cut(s) 50, 124, 205, 291
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 107, 266, 278
DpnII GATC 3 cut(s) 105, 264, 276
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 20
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 2 cut(s) 298, 329
FaiI YATR 2 cut(s) 296, 327
FatI CATG 2 cut(s) 294, 325
FauI CCCGC 3 cut(s) 167, 235, 303
Fnu4HI GCNGC 4 cut(s) 206, 232, 261, 292
FokI GGATG 2 cut(s) 175, 201
Fsp4HI GCNGC 4 cut(s) 206, 232, 261, 292
FspI TGCGCA 2 cut(s) 209, 230
GlaI GCGC 4 cut(s) 183, 209, 230, 283
GluI GCNGC 4 cut(s) 206, 232, 261, 292
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 50
HapII CCGG 5 cut(s) 47, 126, 185, 251, 305
HhaI GCGC 4 cut(s) 184, 210, 231, 284
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 2 cut(s) 298, 329
Hin6I GCGC 4 cut(s) 182, 208, 229, 282
HinP1I GCGC 4 cut(s) 182, 208, 229, 282
HinfI GANTC 2 cut(s) 56, 254
HpaII CCGG 5 cut(s) 47, 126, 185, 251, 305
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 300
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 298, 329
HspAI GCGC 4 cut(s) 182, 208, 229, 282
KasI GGCGCC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 105, 264, 276
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 9 cut(s) 60, 73, 134, 139, 180, 198, 264, 304, 318
Lsp1109I GCAGC 3 cut(s) 192, 243, 278
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 107, 266, 278
MbiI CCGCTC 1 cut(s) 310
MboI GATC 3 cut(s) 105, 264, 276
MboII GAAGA 3 cut(s) 50, 160, 169
MflI RGATCY 1 cut(s) 276
Mly113I GGCGCC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 5 cut(s) 29, 84, 100, 111, 153
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 5 cut(s) 47, 126, 185, 251, 305
MspR9I CCNGG 4 cut(s) 47, 126, 186, 305
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 288, 300
NarI GGCGCC 1 cut(s) 182
NciI CCSGG 4 cut(s) 47, 126, 186, 305
NdeII GATC 3 cut(s) 105, 264, 276
NlaIII CATG 2 cut(s) 298, 329
NlaIV GGNNCC 2 cut(s) 183, 278
NmuCI GTSAC 1 cut(s) 10
NsbI TGCGCA 2 cut(s) 209, 230
NspV TTCGAA 1 cut(s) 54
PfeI GAWTC 2 cut(s) 56, 254
PkrI GCNGC 4 cut(s) 207, 233, 262, 293
PluTI GGCGCC 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 183, 278
PsuI RGATCY 1 cut(s) 276
SatI GCNGC 4 cut(s) 206, 232, 261, 292
Sau3AI GATC 3 cut(s) 105, 264, 276
ScrFI CCNGG 4 cut(s) 47, 126, 186, 305
SetI ASST 5 cut(s) 17, 21, 36, 92, 218
SfoI GGCGCC 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 54
SsiI CCGC 7 cut(s) 5, 174, 234, 242, 260, 280, 310
SspDI GGCGCC 1 cut(s) 181
StyD4I CCNGG 4 cut(s) 45, 124, 184, 303
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 54, 86
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 2 cut(s) 56, 254
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 3 cut(s) 205, 231, 291
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.