Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Reverse (-)

43012220 .. 43016701

Gene Structure 4482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG360800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCGCCTCTGCCTCCTCCAGAGTCGATGCTGCCTCCGCCTCCAGCATTGATGTCACATCCGCCTCCGCCCTTTCTAATCCTCGGACAGTGGGTTCGAATCCTCGATGGAATGAGATCAAATGTGGAGTTAGTGTTAGGGATGATATGGAGGATGCTTGTCCTCAGTGAACAGGTTGAAATTGTAAAGACATGTCGGGAGCTCGGTTTAGGTCCTAGGGGGTTTTATCAACCAGTTTTCCAGCATTTTAACAGATGTCTCAACTCCGGCAAAAATTCTGACAATAGCCACGCCCATGTAGGCAGAGAGAGTAAGGGATTTGTCAACTACAATTTCTTGTTGACAGAGATTCTATGGGTTTTGAATAATCTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

125

Amino Acids

14.21

Weight (kDa)

7.87

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 38, 62, 68
AcsI	RAATTY	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	179, 364
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspA2I	CCTAGG	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	212
AvrII	CCTAGG	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	2 cut(s)	5, 32
BlnI	CCTAGG	1 cut(s)	215
BlsI	GCNGC	2 cut(s)	6, 33
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmsI	GCATC	2 cut(s)	18, 144
BpmI	CTGGAG	2 cut(s)	27, 356
Bpu14I	TTCGAA	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	82, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse1I	ACTGG	2 cut(s)	233, 373
BseDI	CCNNGG	2 cut(s)	82, 215
BseGI	GGATG	3 cut(s)	58, 147, 159
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	2 cut(s)	233, 373
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	4 cut(s)	5, 38, 62, 68
BspCNI	CTCAG	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	233, 373
BssECI	CCNNGG	2 cut(s)	82, 215
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	58, 147, 159
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 37
BstNSI	RCATGY	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	58, 147, 159
BtsIMutI	CAGTG	2 cut(s)	95, 172
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	2 cut(s)	192, 296
CviJI	RGCY	2 cut(s)	202, 288
CviKI_1	RGCY	2 cut(s)	202, 288
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
EciI	GGCGGA	3 cut(s)	27, 51, 57
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	2 cut(s)	195, 299
FaiI	YATR	4 cut(s)	148, 193, 297, 355
FatI	CATG	2 cut(s)	191, 295
Fnu4HI	GCNGC	2 cut(s)	5, 32
FokI	GGATG	3 cut(s)	45, 154, 166
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	5, 32
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	2 cut(s)	5, 32
GsuI	CTGGAG	2 cut(s)	27, 356
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	2 cut(s)	195, 299
HincII	GTYRAC	2 cut(s)	325, 342
HindII	GTYRAC	2 cut(s)	325, 342
HinfI	GANTC	3 cut(s)	23, 99, 349
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	3 cut(s)	170, 325, 342
Hpy188I	TCNGA	2 cut(s)	86, 280
Hpy188III	TCNNGA	2 cut(s)	20, 197
Hpy8I	GTNNAC	3 cut(s)	170, 325, 342
HpyCH4III	ACNGT	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 37
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	195, 299
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	33, 57, 158, 246, 254, 280
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	18, 144
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	3 cut(s)	180, 274, 331
MlyI	GAGTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	10, 37
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	195, 299
NmuCI	GTSAC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	97
PciI	ACATGT	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	99, 349
PkrI	GCNGC	2 cut(s)	6, 33
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	5, 32
Sau3AI	GATC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	3 cut(s)	177, 204, 214
SfaNI	GCATC	2 cut(s)	18, 144
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	180, 274, 331
SsiI	CCGC	4 cut(s)	5, 38, 62, 68
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	26, 97, 105
TasI	AATT	3 cut(s)	180, 274, 331
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	99, 349
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	95, 172
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	54
TspRI	CASTG	2 cut(s)	95, 172
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	195
XmaJI	CCTAGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.