Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

28194654 .. 28195390

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1151100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGTGGATCTCGAAGGATCTCTTCGATGCGTATTTACGACGGGCCAATTTTGACGGCGATGGCCGGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCTGGTCACCCAAACAGGTCCTTGCGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

45

Amino Acids

4.96

Weight (kDa)

8.36

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AclWI	GGATC	2 cut(s)	14, 24
AcoI	YGGCCR	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	96
AlwI	GGATC	2 cut(s)	14, 24
AoxI	GGCC	2 cut(s)	42, 61
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	42, 120
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	104
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	68, 70
BciT130I	CCWGG	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	42, 120
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	44, 63
BsiSI	CCGG	1 cut(s)	64
BsnI	GGCC	2 cut(s)	44, 63
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	6, 16
BspANI	GGCC	2 cut(s)	44, 63
BspPI	GGATC	2 cut(s)	14, 24
BsrDI	GCAATG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	6, 16
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	9, 19
BstMBI	GATC	2 cut(s)	6, 16
BstNI	CCWGG	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	6, 16
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	2 cut(s)	6, 16
BsuRI	GGCC	2 cut(s)	44, 63
BtgZI	GCGATG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	42, 120
CviJI	RGCY	4 cut(s)	44, 63, 83, 102
CviKI_1	RGCY	4 cut(s)	44, 63, 83, 102
DpnI	GATC	2 cut(s)	8, 18
DpnII	GATC	2 cut(s)	6, 16
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	120
EcoO65I	GGTNACC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	104
FalI	AAGNNNNNCTT	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	104
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	44, 63
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	42, 89
HpyAV	CCTTC	1 cut(s)	7
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	6, 16
LpnPI	CCDG	5 cut(s)	77, 83, 90, 103, 110
LweI	GCATC	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	8, 18
MboI	GATC	2 cut(s)	6, 16
MboII	GAAGA	2 cut(s)	13, 85
MflI	RGATCY	2 cut(s)	6, 16
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	46
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	6, 16
NmuCI	GTSAC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	42, 120
PspPPI	RGGWCCY	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	6, 16
Sau3AI	GATC	2 cut(s)	6, 16
Sau96I	GGNCC	2 cut(s)	42, 120
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	16
SgeI	CNNG	7 cut(s)	22, 53, 76, 109, 110, 117, 130
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	96
TaqI	TCGA	2 cut(s)	11, 24
TasI	AATT	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.