Rh2CG036300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001694
Physical Location & Seq
Reverse (-)
2865746 .. 2866036
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG036300.1

Sequence Viewer

Length: 291 bp
ATGGGCAGACGTTGGGCTACGCAAGACATGGGTGTGCTGTGTTGCGCAGGCGGCGGGGCAGGGCTGCGGATTCTGCAGCGATCTGCGCTGTGGACTGCGCGGGTTGGCAGGCACGGGTGTGCTGGCCGCTTGGGTAGGAGGACGATGGGATGCTGCTGTGCAAGCAGGAGGGGGACTAGGCGCGGGTGGAGGCTAGATCAAAGGCTGGGAGGCTCCGGTGAGGAGGCTGGATCGAAGGCCGGAATGCAGGCGGTTGGGATTGGTGCTGCAGGTGGTTGGTGCTATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.11

Weight (kDa)

11.38

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc16I TGCGCA 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 260
AccII CGCG 2 cut(s) 100, 183
AciI CCGC 7 cut(s) 51, 54, 67, 100, 127, 183, 251
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 117
AlwI GGATC 1 cut(s) 238
AoxI GGCC 2 cut(s) 124, 237
ApeKI GCWGC 4 cut(s) 64, 76, 153, 266
AspLEI GCGC 4 cut(s) 47, 88, 100, 183
AsuHPI GGTGA 1 cut(s) 230
BbvI GCAGC 4 cut(s) 51, 88, 140, 253
BccI CCATC 1 cut(s) 139
BfaI CTAG 2 cut(s) 177, 194
BfmI CTRYAG 3 cut(s) 74, 267, 283
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 6 cut(s) 52, 65, 77, 127, 154, 267
BlsI GCNGC 6 cut(s) 53, 66, 78, 128, 155, 268
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 215
BseGI GGATG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 51, 88, 140, 253
BseYI CCCAGC 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 100, 183
BshFI GGCC 2 cut(s) 126, 239
BsiSI CCGG 2 cut(s) 216, 240
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 2 cut(s) 126, 239
Bsp143I GATC 3 cut(s) 80, 196, 230
BspACI CCGC 7 cut(s) 51, 54, 67, 100, 127, 183, 251
BspANI GGCC 2 cut(s) 126, 239
BspFNI CGCG 2 cut(s) 100, 183
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 2 cut(s) 78, 271
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 238
BssMI GATC 3 cut(s) 80, 196, 230
BstC8I GCNNGC 5 cut(s) 49, 110, 124, 163, 249
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 2 cut(s) 100, 183
BstHHI GCGC 4 cut(s) 47, 88, 100, 183
BstKTI GATC 3 cut(s) 83, 199, 233
BstMBI GATC 3 cut(s) 80, 196, 230
BstMWI GCNNNNNNNGC 4 cut(s) 51, 73, 85, 162
BstSFI CTRYAG 3 cut(s) 74, 267, 283
BstUI CGCG 2 cut(s) 100, 183
BstV1I GCAGC 4 cut(s) 51, 88, 140, 253
BsuRI GGCC 2 cut(s) 126, 239
BtsCI GGATG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 5 cut(s) 49, 110, 124, 163, 249
CfoI GCGC 4 cut(s) 47, 88, 100, 183
CviAII CATG 1 cut(s) 28
CviJI RGCY 8 cut(s) 17, 64, 126, 193, 205, 213, 227, 239
CviKI_1 RGCY 8 cut(s) 17, 64, 126, 193, 205, 213, 227, 239
DpnI GATC 3 cut(s) 82, 198, 232
DpnII GATC 3 cut(s) 80, 196, 230
EaeI YGGCCR 1 cut(s) 124
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 285
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 27
FauI CCCGC 3 cut(s) 47, 93, 176
Fnu4HI GCNGC 6 cut(s) 52, 65, 77, 127, 154, 267
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 6 cut(s) 52, 65, 77, 127, 154, 267
FspBI CTAG 2 cut(s) 177, 194
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 4 cut(s) 46, 87, 99, 182
GluI GCNGC 6 cut(s) 52, 65, 77, 127, 154, 267
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 126, 239
HapII CCGG 2 cut(s) 216, 240
HhaI GCGC 4 cut(s) 47, 88, 100, 183
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 4 cut(s) 45, 86, 98, 181
HinP1I GCGC 4 cut(s) 45, 86, 98, 181
HinfI GANTC 1 cut(s) 70
HpaII CCGG 2 cut(s) 216, 240
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 76, 161, 247, 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 73, 85, 162
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 4 cut(s) 45, 86, 98, 181
Kzo9I GATC 3 cut(s) 80, 196, 230
LmnI GCTCC 1 cut(s) 218
Lsp1109I GCAGC 4 cut(s) 51, 88, 140, 253
LweI GCATC 1 cut(s) 140
MaeI CTAG 2 cut(s) 177, 194
MaeII ACGT 1 cut(s) 10
MalI GATC 3 cut(s) 82, 198, 232
MboI GATC 3 cut(s) 80, 196, 230
MnlI CCTC 6 cut(s) 132, 162, 183, 203, 214, 217
MslI CAYNNNNRTG 2 cut(s) 32, 117
MspI CCGG 2 cut(s) 216, 240
Mva1269I GAATGC 1 cut(s) 249
MvnI CGCG 2 cut(s) 100, 183
MwoI GCNNNNNNNGC 4 cut(s) 51, 73, 85, 162
NdeII GATC 3 cut(s) 80, 196, 230
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 214
NsbI TGCGCA 1 cut(s) 46
OliI CACNNNNGTG 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 260
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 6 cut(s) 53, 66, 78, 128, 155, 268
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 214
PstI CTGCAG 2 cut(s) 78, 271
RseI CAYNNNNRTG 2 cut(s) 32, 117
SatI GCNGC 6 cut(s) 52, 65, 77, 127, 154, 267
Sau3AI GATC 3 cut(s) 80, 196, 230
SetI ASST 2 cut(s) 13, 274
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 3 cut(s) 74, 267, 283
SmiMI CAYNNNNRTG 2 cut(s) 32, 117
SsiI CCGC 7 cut(s) 51, 54, 67, 100, 127, 183, 251
SspMI CTAG 2 cut(s) 177, 194
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 233
TauI GCSGC 2 cut(s) 54, 129
TfiI GAWTC 1 cut(s) 70
TseI GCWGC 4 cut(s) 64, 76, 153, 266
XspI CTAG 2 cut(s) 177, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.