Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Reverse (-)

38951772 .. 38952589

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG258000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCATCTCCTTGTCTCTCTCATCCCCCATTCCCCGATCTGCTCTTTCTCTCTCATCCCCCATTCTCCGATCTCTCTCTCTCCCTCTCTGTGGCAGCGTGCTGGGCGTGCGCAGGTGGGGTGGCGCTGGGATGGGCAGGCGTTGGGCTGCGCAAGACGTGAGTGTGCTGTGGTGCGCAGGCGGCGGGGCAGGCCTGCCGGATTCTGCAACGATCTGTGTTGGGATCTGCGCTGTGGGCTGCGCGGGTTGGCCGGCGCAGGTGTGCTGGCCGCGTGGGTAGGAGGACGACGGGATGCTGCTGTGCGAGCAGGAGAGGGACTAGGCGCGGGTGGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.88

Weight (kDa)

11.2

Isoelectric Point (pI)

71.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	103, 248
Acc16I	TGCGCA	3 cut(s)	111, 151, 176
Acc36I	ACCTGC	2 cut(s)	103, 248
AccII	CGCG	3 cut(s)	243, 272, 326
AciI	CCGC	5 cut(s)	181, 184, 243, 270, 326
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	2 cut(s)	249, 267
AfiI	CCNNNNNNNGG	1 cut(s)	90
AjiI	CACGTC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	3 cut(s)	191, 249, 267
ApeKI	GCWGC	4 cut(s)	94, 147, 238, 296
AspLEI	GCGC	8 cut(s)	112, 126, 152, 177, 231, 243, 257, 326
BbvI	GCAGC	4 cut(s)	106, 134, 225, 283
BccI	CCATC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	320, 337
BfoI	RGCGCY	1 cut(s)	127
BfuAI	ACCTGC	2 cut(s)	103, 248
BisI	GCNGC	6 cut(s)	95, 148, 182, 239, 270, 297
BlsI	GCNGC	6 cut(s)	96, 149, 183, 240, 271, 298
BmgBI	CACGTC	1 cut(s)	158
BmsI	GCATC	2 cut(s)	13, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	251
BseGI	GGATG	4 cut(s)	21, 54, 136, 298
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	106, 134, 225, 283
BseYI	CCCAGC	2 cut(s)	101, 126
Bsh1236I	CGCG	3 cut(s)	243, 272, 326
BshFI	GGCC	3 cut(s)	193, 251, 269
BsiSI	CCGG	2 cut(s)	198, 252
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	193, 251, 269
Bsp143I	GATC	4 cut(s)	36, 69, 211, 223
BspACI	CCGC	5 cut(s)	181, 184, 243, 270, 326
BspANI	GGCC	3 cut(s)	193, 251, 269
BspFNI	CGCG	3 cut(s)	243, 272, 326
BspMI	ACCTGC	2 cut(s)	103, 248
BspPI	GGATC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	4 cut(s)	36, 69, 211, 223
BstC8I	GCNNGC	9 cut(s)	99, 108, 138, 179, 191, 195, 253, 267, 306
BstF5I	GGATG	4 cut(s)	21, 54, 136, 298
BstFNI	CGCG	3 cut(s)	243, 272, 326
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	8 cut(s)	112, 126, 152, 177, 231, 243, 257, 326
BstKTI	GATC	4 cut(s)	39, 72, 214, 226
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	4 cut(s)	36, 69, 211, 223
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 107, 181, 190, 235, 305
BstUI	CGCG	3 cut(s)	243, 272, 326
BstV1I	GCAGC	4 cut(s)	106, 134, 225, 283
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	193, 251, 269
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	4 cut(s)	21, 54, 136, 298
BveI	ACCTGC	2 cut(s)	103, 248
Cac8I	GCNNGC	9 cut(s)	99, 108, 138, 179, 191, 195, 253, 267, 306
CfoI	GCGC	8 cut(s)	112, 126, 152, 177, 231, 243, 257, 326
Cfr10I	RCCGGY	1 cut(s)	251
CviJI	RGCY	6 cut(s)	147, 193, 238, 251, 269, 336
CviKI_1	RGCY	6 cut(s)	147, 193, 238, 251, 269, 336
DpnI	GATC	4 cut(s)	38, 71, 213, 225
DpnII	GATC	4 cut(s)	36, 69, 211, 223
EaeI	YGGCCR	2 cut(s)	249, 267
Eco147I	AGGCCT	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	6
FaqI	GGGAC	1 cut(s)	330
FauI	CCCGC	3 cut(s)	177, 236, 319
Fnu4HI	GCNGC	6 cut(s)	95, 148, 182, 239, 270, 297
FokI	GGATG	4 cut(s)	8, 41, 143, 305
Fsp4HI	GCNGC	6 cut(s)	95, 148, 182, 239, 270, 297
FspBI	CTAG	2 cut(s)	320, 337
FspI	TGCGCA	3 cut(s)	111, 151, 176
GlaI	GCGC	8 cut(s)	111, 125, 151, 176, 230, 242, 256, 325
GluI	GCNGC	6 cut(s)	95, 148, 182, 239, 270, 297
GsaI	CCCAGC	2 cut(s)	105, 130
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	193, 251, 269
HapII	CCGG	2 cut(s)	198, 252
HhaI	GCGC	8 cut(s)	112, 126, 152, 177, 231, 243, 257, 326
Hin6I	GCGC	8 cut(s)	110, 124, 150, 175, 229, 241, 255, 324
HinP1I	GCGC	8 cut(s)	110, 124, 150, 175, 229, 241, 255, 324
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	2 cut(s)	198, 252
Hpy188I	TCNGA	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	4, 207
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 107, 181, 190, 235, 305
HpySE526I	ACGT	1 cut(s)	157
HspAI	GCGC	8 cut(s)	110, 124, 150, 175, 229, 241, 255, 324
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	36, 69, 211, 223
Lsp1109I	GCAGC	4 cut(s)	106, 134, 225, 283
LweI	GCATC	2 cut(s)	13, 283
MaeI	CTAG	2 cut(s)	320, 337
MaeII	ACGT	1 cut(s)	157
MalI	GATC	4 cut(s)	38, 71, 213, 225
MboI	GATC	4 cut(s)	36, 69, 211, 223
MflI	RGATCY	1 cut(s)	223
MnlI	CCTC	4 cut(s)	94, 275, 307, 326
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	251
MspI	CCGG	2 cut(s)	198, 252
MvnI	CGCG	3 cut(s)	243, 272, 326
MwoI	GCNNNNNNNGC	6 cut(s)	103, 107, 181, 190, 235, 305
NaeI	GCCGGC	1 cut(s)	253
NdeII	GATC	4 cut(s)	36, 69, 211, 223
NgoMIV	GCCGGC	1 cut(s)	251
NsbI	TGCGCA	3 cut(s)	111, 151, 176
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	2 cut(s)	103, 248
PceI	AGGCCT	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	6 cut(s)	96, 149, 183, 240, 271, 298
PspFI	CCCAGC	2 cut(s)	101, 126
PsuI	RGATCY	1 cut(s)	223
SatI	GCNGC	6 cut(s)	95, 148, 182, 239, 270, 297
Sau3AI	GATC	4 cut(s)	36, 69, 211, 223
SetI	ASST	3 cut(s)	117, 160, 262
SfaNI	GCATC	2 cut(s)	13, 283
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	5 cut(s)	181, 184, 243, 270, 326
SspMI	CTAG	2 cut(s)	320, 337
StuI	AGGCCT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	160
TauI	GCSGC	2 cut(s)	184, 272
TfiI	GAWTC	1 cut(s)	201
TseI	GCWGC	4 cut(s)	94, 147, 238, 296
XspI	CTAG	2 cut(s)	320, 337
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.