Rh6DG513500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001694
Physical Location & Seq
Reverse (-)
66599061 .. 66599312
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG513500.1

Sequence Viewer

Length: 252 bp
ATGTGCTGTGTTGCGCAGGCGGCGGGGCAGGGCTGCCGGATTCTGCAGCGATCTGTGTTGGGCAGGCGGCGCTGTGGGCTGCGCGGGTTGGCCGGCGCTGGTGTGCTGGCCGCGTGGGTAGGAGGACGCTGGGAGGCTCCGGTGAGGAGACTGGATCGAAGGCCGGAATGCAAGCTGTTGGGATCGGTGTTGCAGGCGGTTGGGATCGGTGCTGCAGATGACTCCGGTGAAGGGGAGGCGGTGCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.64

Weight (kDa)

9.47

Isoelectric Point (pI)

71.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 15
AccII CGCG 2 cut(s) 84, 113
AciI CCGC 7 cut(s) 20, 23, 67, 84, 111, 197, 239
AclWI GGATC 3 cut(s) 162, 190, 212
AcoI YGGCCR 2 cut(s) 90, 108
AfiI CCNNNNNNNGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 3 cut(s) 162, 190, 212
AoxI GGCC 3 cut(s) 90, 108, 161
ApeKI GCWGC 5 cut(s) 33, 46, 79, 212, 244
AspLEI GCGC 4 cut(s) 16, 72, 84, 98
AsuHPI GGTGA 2 cut(s) 154, 239
BbvI GCAGC 5 cut(s) 20, 58, 66, 199, 231
BcoDI GTCTC 1 cut(s) 142
BfmI CTRYAG 3 cut(s) 44, 213, 245
BfoI RGCGCY 2 cut(s) 73, 99
BisI GCNGC 8 cut(s) 21, 34, 47, 68, 80, 111, 213, 245
BlsI GCNGC 8 cut(s) 22, 35, 48, 69, 81, 112, 214, 246
BmiI GGNNCC 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 139, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 5 cut(s) 20, 58, 66, 199, 231
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 84, 113
BshFI GGCC 3 cut(s) 92, 110, 163
BsiSI CCGG 5 cut(s) 37, 93, 140, 164, 225
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 3 cut(s) 92, 110, 163
Bsp143I GATC 4 cut(s) 50, 154, 182, 204
BspACI CCGC 7 cut(s) 20, 23, 67, 84, 111, 197, 239
BspANI GGCC 3 cut(s) 92, 110, 163
BspFNI CGCG 2 cut(s) 84, 113
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 3 cut(s) 48, 217, 249
BspPI GGATC 3 cut(s) 162, 190, 212
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 4 cut(s) 50, 154, 182, 204
BstC8I GCNNGC 6 cut(s) 18, 65, 94, 108, 173, 195
BstFNI CGCG 2 cut(s) 84, 113
BstH2I RGCGCY 2 cut(s) 73, 99
BstHHI GCGC 4 cut(s) 16, 72, 84, 98
BstKTI GATC 4 cut(s) 53, 157, 185, 207
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 4 cut(s) 50, 154, 182, 204
BstMWI GCNNNNNNNGC 3 cut(s) 20, 69, 76
BstSFI CTRYAG 3 cut(s) 44, 213, 245
BstUI CGCG 2 cut(s) 84, 113
BstV1I GCAGC 5 cut(s) 20, 58, 66, 199, 231
BsuRI GGCC 3 cut(s) 92, 110, 163
Cac8I GCNNGC 6 cut(s) 18, 65, 94, 108, 173, 195
CfoI GCGC 4 cut(s) 16, 72, 84, 98
Cfr10I RCCGGY 1 cut(s) 92
CseI GACGC 1 cut(s) 135
CviJI RGCY 7 cut(s) 33, 79, 92, 110, 137, 163, 175
CviKI_1 RGCY 7 cut(s) 33, 79, 92, 110, 137, 163, 175
DpnI GATC 4 cut(s) 52, 156, 184, 206
DpnII GATC 4 cut(s) 50, 154, 182, 204
EaeI YGGCCR 2 cut(s) 90, 108
FauI CCCGC 2 cut(s) 16, 77
Fnu4HI GCNGC 8 cut(s) 21, 34, 47, 68, 80, 111, 213, 245
Fsp4HI GCNGC 8 cut(s) 21, 34, 47, 68, 80, 111, 213, 245
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 4 cut(s) 15, 71, 83, 97
GluI GCNGC 8 cut(s) 21, 34, 47, 68, 80, 111, 213, 245
GsaI CCCAGC 1 cut(s) 133
HaeII RGCGCY 2 cut(s) 73, 99
HaeIII GGCC 3 cut(s) 92, 110, 163
HapII CCGG 5 cut(s) 37, 93, 140, 164, 225
HgaI GACGC 1 cut(s) 135
HhaI GCGC 4 cut(s) 16, 72, 84, 98
Hin6I GCGC 4 cut(s) 14, 70, 82, 96
HinP1I GCGC 4 cut(s) 14, 70, 82, 96
HinfI GANTC 2 cut(s) 40, 221
HpaII CCGG 5 cut(s) 37, 93, 140, 164, 225
HphI GGTGA 2 cut(s) 154, 239
HpyAV CCTTC 2 cut(s) 153, 224
HpyCH4V TGCA 5 cut(s) 46, 171, 193, 215, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 69, 76
HspAI GCGC 4 cut(s) 14, 70, 82, 96
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 50, 154, 182, 204
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 5 cut(s) 20, 58, 66, 199, 231
MalI GATC 4 cut(s) 52, 156, 184, 206
MboI GATC 4 cut(s) 50, 154, 182, 204
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 4 cut(s) 116, 127, 138, 229
MroNI GCCGGC 1 cut(s) 92
MspI CCGG 5 cut(s) 37, 93, 140, 164, 225
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 2 cut(s) 84, 113
MwoI GCNNNNNNNGC 3 cut(s) 20, 69, 76
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 4 cut(s) 50, 154, 182, 204
NgoMIV GCCGGC 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 138
NsbI TGCGCA 1 cut(s) 15
PctI GAATGC 1 cut(s) 173
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 8 cut(s) 22, 35, 48, 69, 81, 112, 214, 246
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 3 cut(s) 48, 217, 249
SatI GCNGC 8 cut(s) 21, 34, 47, 68, 80, 111, 213, 245
Sau3AI GATC 4 cut(s) 50, 154, 182, 204
SchI GAGTC 1 cut(s) 215
SetI ASST 1 cut(s) 177
SfcI CTRYAG 3 cut(s) 44, 213, 245
SsiI CCGC 7 cut(s) 20, 23, 67, 84, 111, 197, 239
TaqI TCGA 1 cut(s) 157
TauI GCSGC 3 cut(s) 23, 70, 113
TfiI GAWTC 1 cut(s) 40
TseI GCWGC 5 cut(s) 33, 46, 79, 212, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.