Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

17725730 .. 17726171

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCTAAATGTGCAGTCCAGATTGATAGAATGACTACCCATCATGCCGCATTATCTTTGATGGAGCGGTTTAGGGAGGGACGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGTTTGCTAAATCTAATATTTTTGAACCTGCAAATAATTACTCCAATGCTGGCAATGTAGCCTGGAGACCTGCTTCTGGCTTTCAACAACAGCAACTGATGCCTGGTCTTGGTGCTCGGCACATGGCACCCCTAGCTGGAGGAAGCAGCAAGCCAATTAGCGGAAACCCAGAGTACTGGAATTGGAGAAACATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

10.16

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 193
AccB1I	GGYRCC	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	67
AciI	CCGC	3 cut(s)	48, 67, 276
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	4 cut(s)	191, 224, 251, 275
AgsI	TTSAA	2 cut(s)	140, 200
AjnI	CCWGG	2 cut(s)	176, 217
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	175
AlwNI	CAGNNNCTG	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	48, 55
BciT130I	CCWGG	2 cut(s)	178, 219
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	248
BfuAI	ACCTGC	2 cut(s)	151, 193
BisI	GCNGC	2 cut(s)	48, 262
BlsI	GCNGC	2 cut(s)	49, 263
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	178, 219
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	178, 219
BmsI	GCATC	1 cut(s)	204
BpmI	CTGGAG	2 cut(s)	199, 273
BsaHI	GRCGYC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 224, 251, 275
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	2 cut(s)	115, 175
BseBI	CCWGG	2 cut(s)	178, 219
BseLI	CCNNNNNNNGG	4 cut(s)	191, 224, 251, 275
BseMI	GCAATG	2 cut(s)	115, 175
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	4 cut(s)	191, 224, 251, 275
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	232
BspACI	CCGC	3 cut(s)	48, 67, 276
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	2 cut(s)	151, 193
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	115, 175
BsrI	ACTGG	1 cut(s)	296
BssNI	GRCGYC	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	178, 219
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	166, 266
BstMAI	GTCTC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 248
BstNI	CCWGG	2 cut(s)	178, 219
BstSCI	CCNGG	2 cut(s)	176, 217
BstV1I	GCAGC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	2 cut(s)	151, 193
Cac8I	GCNNGC	2 cut(s)	166, 266
CaiI	CAGNNNCTG	1 cut(s)	211
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	44, 238
CviJI	RGCY	4 cut(s)	176, 195, 251, 268
CviKI_1	RGCY	4 cut(s)	176, 195, 251, 268
CviQI	GTAC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	176, 217
FaeI	CATG	2 cut(s)	47, 241
FaiI	YATR	3 cut(s)	45, 116, 239
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	43, 237
Fnu4HI	GCNGC	2 cut(s)	48, 262
Fsp4HI	GCNGC	2 cut(s)	48, 262
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	48, 262
GsuI	CTGGAG	2 cut(s)	199, 273
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	47, 241
Hpy188III	TCNNGA	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	14, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 248
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	47, 241
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	248
MbiI	CCGCTC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	3 cut(s)	151, 270, 295
MnlI	CCTC	3 cut(s)	70, 96, 248
MspR9I	CCNGG	2 cut(s)	178, 219
MvaI	CCWGG	2 cut(s)	178, 219
MwoI	GCNNNNNNNGC	2 cut(s)	214, 248
NlaIII	CATG	2 cut(s)	47, 241
NlaIV	GGNNCC	1 cut(s)	243
NmeAIII	GCCGAG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	49, 263
Psp6I	CCWGG	2 cut(s)	176, 217
PspGI	CCWGG	2 cut(s)	176, 217
PspN4I	GGNNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SatI	GCNGC	2 cut(s)	48, 262
ScaI	AGTACT	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	178, 219
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	3 cut(s)	145, 187, 253
SfaNI	GCATC	1 cut(s)	204
Sse9I	AATT	3 cut(s)	151, 270, 295
SsiI	CCGC	3 cut(s)	48, 67, 276
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	176, 217
TasI	AATT	3 cut(s)	151, 270, 295
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	50
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	261
TspRI	CASTG	1 cut(s)	102
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.