pycom05g14240

endocytosis

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
17752142 .. 17752553
412 bp
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UTR
Exon/CDS
Intron
pycom05g14240.1

Sequence Viewer

Length: 285 bp
ATGACTACCCATCATGCCGCATTATCTTTGATGGAGCGGTTTAGGGAGGGATGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGTTTGCTAAATCCAATATTTGTGAACCTGCAAATAATTACTCCAATGCTGGCAATGTAGCCTGGAGACCTGCTTCTGGCTTTCAACAACAGCAACTGATGCCTGGTCTTGGTGCTCGGCACATGGCACCCCTAGCTGGAGGAAGCAGCAGGCCAATTAGCGGAAACCCAGAGTACTGGAATTGGAGAAACATCTTGTAG

Protein Analysis

95

Amino Acids

10.29

Weight (kDa)

9.38

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 121, 163
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 37
AciI CCGC 3 cut(s) 18, 37, 246
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 4 cut(s) 161, 194, 221, 245
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 2 cut(s) 146, 187
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 18, 25
BciT130I CCWGG 2 cut(s) 148, 189
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 218
BfuAI ACCTGC 2 cut(s) 121, 163
BisI GCNGC 2 cut(s) 18, 232
BlsI GCNGC 2 cut(s) 19, 233
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 148, 189
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 148, 189
BmsI GCATC 2 cut(s) 41, 174
BpmI CTGGAG 2 cut(s) 169, 243
BsaI GGTCTC 1 cut(s) 145
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 194, 221, 245
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 2 cut(s) 85, 145
BseBI CCWGG 2 cut(s) 148, 189
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 4 cut(s) 161, 194, 221, 245
BseMI GCAATG 2 cut(s) 85, 145
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 161, 194, 221, 245
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 202
BspACI CCGC 3 cut(s) 18, 37, 246
BspANI GGCC 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 2 cut(s) 121, 163
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 85, 145
BsrI ACTGG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 148, 189
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 136, 236
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 184, 218
BstNI CCWGG 2 cut(s) 148, 189
BstSCI CCNGG 2 cut(s) 146, 187
BstV1I GCAGC 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 2 cut(s) 121, 163
Cac8I GCNNGC 2 cut(s) 136, 236
CaiI CAGNNNCTG 1 cut(s) 181
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 14, 208
CviJI RGCY 4 cut(s) 146, 165, 221, 238
CviKI_1 RGCY 4 cut(s) 146, 165, 221, 238
CviQI GTAC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 146, 187
FaeI CATG 2 cut(s) 17, 211
FaiI YATR 3 cut(s) 15, 86, 209
FatI CATG 2 cut(s) 13, 207
Fnu4HI GCNGC 2 cut(s) 18, 232
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 18, 232
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 18, 232
GsuI CTGGAG 2 cut(s) 169, 243
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 2 cut(s) 17, 211
Hpy166II GTNNAC 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 218
Hsp92II CATG 2 cut(s) 17, 211
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 41, 174
MaeI CTAG 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 37
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 3 cut(s) 121, 240, 265
MnlI CCTC 3 cut(s) 40, 66, 218
MspR9I CCNGG 2 cut(s) 148, 189
MvaI CCWGG 2 cut(s) 148, 189
MwoI GCNNNNNNNGC 2 cut(s) 184, 218
NlaIII CATG 2 cut(s) 17, 211
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 181
PkrI GCNGC 2 cut(s) 19, 233
Psp6I CCWGG 2 cut(s) 146, 187
PspGI CCWGG 2 cut(s) 146, 187
PspN4I GGNNCC 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 2 cut(s) 18, 232
ScaI AGTACT 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 148, 189
SduI GDGCHC 1 cut(s) 202
SetI ASST 3 cut(s) 115, 157, 223
SfaNI GCATC 2 cut(s) 41, 174
Sse9I AATT 3 cut(s) 121, 240, 265
SsiI CCGC 3 cut(s) 18, 37, 246
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 146, 187
TasI AATT 3 cut(s) 121, 240, 265
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 20
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 231
TspRI CASTG 1 cut(s) 72
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.