MD09G1193700.v1.1

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000736
Physical Location & Seq
Reverse (-)
17363503 .. 17364576
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1193700.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGGCGTGGTCTGCGAGAAAGCGCAGGCAGACGGAGTCGGAGCCCTTTGAATTTCAGAGGCGGCGGGTCGAGAAGAGGCAAAATACGCAGGGCTTGGACCCCGGATTGAAGGCCCATTGTGCTGAAATCTTGCAGCTTCTCATGCAGCACGGACATGGGAAGCAATTTTCGAAGCGCGTTGATCCTGTGGCGTCGAATTTTCCGGATTATCTCTACGTCATCCGGAAGCCGATTGATCTGGGTACTATCAAGTCCGACTTGGAAAAGGGTTACTACTCCAGCGCCGATTCCTTTGCCGCTGATGTGAGGCGGGTGTTCTTGAATGCCATGATCTATTACCCTCGAGGGAATTATGTGCGCGCAGCCGCCCAACATCTCAGTAATCTCTTTAACACGAAGTGGGAAGAAACCATGGCCAAATTCTCAGTTCATCGTCCTCTGCCACCTCCCAAAACCAAGGGTTTGTCGTCTCTGCCGTCTTCGTCCTTCTTCTCACCCGAACACATACATGGCGGTAGGACCGAGACCTGTTCTCCTTCTTCTTCTTCTACTACGGTTATTCAAAGTCAAGGGCTTTTTGGGGTTCATTCAATTGCAAACACCGGTGGCAAAGACGATGACTCTGTCATTGCCACCCTCGTTGTTGAACATTCTGGACATTCTGTTGCAACTGTCACTGAGAAGAGCAGAGGACCAAGAGAAGGGAGAGTTGAGTTGCTGAAGCTTCGCTTTTCAGATACATTGTCGAAAGCTAACAAGATCTTAAAAGGTGTACCCGACTCTCCTCCCGAGCAGAGGACCAAGAGAAGGGATAGCCTCAGAAAATCAGCTCGGCGTAGGATTTCGAGTGTGCAAAAGTCTGTGATGTTTGATCATGATTCTAAGCACTATCTCAGGGAACTTGAGAAGCTGTGCGGGTGTGGCAGCAAAGATCCTTTTCTCAACGTTGGACAAGGATTCCCTCTCAAGGAGTTGGGTTTGCACATTAAGGATGAAGAATATGACTTGCAAGGTCTCGACGAGGACGTCTTTCTCAGCGGAGATTGGGAGGAAGGAGAGATCATTGGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

358

Amino Acids

40.07

Weight (kDa)

9.18

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 40 - 124 1.6e-17 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
AatII GACGTC 1 cut(s) 1029
AbsI CCTCGAGG 1 cut(s) 342
AccII CGCG 2 cut(s) 177, 360
AccIII TCCGGA 2 cut(s) 202, 222
AciI CCGC 8 cut(s) 61, 64, 297, 310, 366, 513, 915, 1038
AclI AACGTT 1 cut(s) 945
AclWI GGATC 2 cut(s) 176, 926
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 3 cut(s) 50, 196, 419
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 2 cut(s) 191, 1026
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 2 cut(s) 244, 774
AfiI CCNNNNNNNGG 4 cut(s) 701, 795, 807, 967
AgeI ACCGGT 1 cut(s) 602
AgsI TTSAA 6 cut(s) 50, 109, 322, 563, 591, 647
AluBI AGCT 5 cut(s) 136, 724, 752, 830, 910
AluI AGCT 5 cut(s) 136, 724, 752, 830, 910
Alw26I GTCTC 3 cut(s) 474, 518, 1019
AlwI GGATC 2 cut(s) 176, 926
Ama87I CYCGRG 2 cut(s) 342, 788
Aor13HI TCCGGA 2 cut(s) 202, 222
AoxI GGCC 2 cut(s) 111, 414
ApeKI GCWGC 4 cut(s) 133, 145, 362, 924
ApoI RAATTY 3 cut(s) 50, 196, 419
AsiGI ACCGGT 1 cut(s) 602
AspLEI GCGC 5 cut(s) 24, 177, 284, 360, 362
AspS9I GGNCC 5 cut(s) 97, 112, 519, 692, 798
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 486
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 2 cut(s) 342, 788
AvaII GGWCC 4 cut(s) 97, 519, 692, 798
BalI TGGCCA 1 cut(s) 416
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 145, 157, 374, 936
BceAI ACGGC 1 cut(s) 460
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 3 cut(s) 474, 518, 1019
BfoI RGCGCY 1 cut(s) 285
BglII AGATCT 1 cut(s) 759
BisI GCNGC 7 cut(s) 62, 134, 146, 297, 363, 366, 925
BlsI GCNGC 7 cut(s) 63, 135, 147, 298, 364, 367, 926
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 4 cut(s) 97, 519, 692, 798
BmeT110I CYCGRG 2 cut(s) 342, 788
BmgT120I GGNCC 5 cut(s) 97, 112, 519, 692, 798
BmiI GGNNCC 2 cut(s) 42, 99
BmrFI CCNGG 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 923, 950
BpuMI CCSGG 1 cut(s) 102
BsaHI GRCGYC 2 cut(s) 191, 1026
BsaI GGTCTC 2 cut(s) 518, 1019
BsaJI CCNNGG 3 cut(s) 100, 411, 456
BsaWI WCCGGW 3 cut(s) 202, 222, 602
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 795, 807, 967
Bse118I RCCGGY 1 cut(s) 602
Bse3DI GCAATG 1 cut(s) 627
BseAI TCCGGA 2 cut(s) 202, 222
BseDI CCNNGG 3 cut(s) 100, 411, 456
BseGI GGATG 2 cut(s) 219, 997
BseLI CCNNNNNNNGG 4 cut(s) 701, 795, 807, 967
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 6 cut(s) 391, 438, 669, 832, 907, 1048
BsePI GCGCGC 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 4 cut(s) 145, 157, 374, 936
Bsh1236I CGCG 2 cut(s) 177, 360
BshFI GGCC 2 cut(s) 113, 416
BshTI ACCGGT 1 cut(s) 602
BsiHKCI CYCGRG 2 cut(s) 342, 788
BsiSI CCGG 4 cut(s) 102, 203, 223, 603
BslI CCNNNNNNNGG 4 cut(s) 701, 795, 807, 967
BsmAI GTCTC 3 cut(s) 474, 518, 1019
BsmBI CGTCTC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 2 cut(s) 113, 416
Bso31I GGTCTC 2 cut(s) 518, 1019
BsoBI CYCGRG 2 cut(s) 342, 788
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 45
Bsp13I TCCGGA 2 cut(s) 202, 222
Bsp143I GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 8 cut(s) 61, 64, 297, 310, 366, 513, 915, 1038
BspANI GGCC 2 cut(s) 113, 416
BspCNI CTCAG 6 cut(s) 390, 437, 670, 831, 906, 1047
BspEI TCCGGA 2 cut(s) 202, 222
BspFNI CGCG 2 cut(s) 177, 360
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 2 cut(s) 42, 99
BspPI GGATC 2 cut(s) 176, 926
BspQI GCTCTTC 1 cut(s) 677
BspT104I TTCGAA 1 cut(s) 170
BspTNI GGTCTC 2 cut(s) 518, 1019
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 602
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 3 cut(s) 100, 411, 456
BssHII GCGCGC 1 cut(s) 358
BssMI GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
BssNI GRCGYC 2 cut(s) 191, 1026
BssT1I CCWWGG 2 cut(s) 411, 456
Bst4CI ACNGT 2 cut(s) 556, 673
Bst6I CTCTTC 2 cut(s) 68, 677
BstACI GRCGYC 2 cut(s) 191, 1026
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 26, 360
BstDEI CTNAG 7 cut(s) 377, 424, 678, 818, 882, 893, 1034
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 219, 997
BstFNI CGCG 2 cut(s) 177, 360
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 5 cut(s) 24, 177, 284, 360, 362
BstKTI GATC 7 cut(s) 184, 238, 333, 762, 874, 934, 1062
BstMAI GTCTC 3 cut(s) 474, 518, 1019
BstMBI GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
BstMWI GCNNNNNNNGC 5 cut(s) 11, 85, 119, 142, 921
BstSCI CCNGG 1 cut(s) 100
BstUI CGCG 2 cut(s) 177, 360
BstV1I GCAGC 4 cut(s) 145, 157, 374, 936
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 759, 931
BstYI RGATCY 2 cut(s) 759, 931
BsuRI GGCC 2 cut(s) 113, 416
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 219, 997
BtsIMutI CAGTG 1 cut(s) 675
Cac8I GCNNGC 2 cut(s) 26, 360
CciI TCATGA 1 cut(s) 874
CfoI GCGC 5 cut(s) 24, 177, 284, 360, 362
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 5 cut(s) 97, 112, 519, 692, 798
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 243, 773
CspAI ACCGGT 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviAII CATG 6 cut(s) 142, 155, 328, 412, 509, 875
CviQI GTAC 2 cut(s) 243, 773
DdeI CTNAG 7 cut(s) 377, 424, 678, 818, 882, 893, 1034
DpnI GATC 7 cut(s) 183, 237, 332, 761, 873, 933, 1061
DpnII GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
DraIII CACNNNGTG 1 cut(s) 399
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 68, 677
EarI CTCTTC 2 cut(s) 68, 677
Eco130I CCWWGG 2 cut(s) 411, 456
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 2 cut(s) 518, 1019
Eco47I GGWCC 4 cut(s) 97, 519, 692, 798
Eco57I CTGAAG 1 cut(s) 740
Eco88I CYCGRG 2 cut(s) 342, 788
EcoT14I CCWWGG 2 cut(s) 411, 456
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 411, 456
Esp3I CGTCTC 1 cut(s) 474
FaeI CATG 6 cut(s) 145, 158, 331, 415, 512, 878
FaiI YATR 9 cut(s) 143, 156, 329, 354, 413, 506, 510, 876, 1002
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 713, 745
FatI CATG 6 cut(s) 141, 154, 327, 411, 508, 874
FauI CCCGC 3 cut(s) 57, 303, 908
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 7 cut(s) 62, 134, 146, 297, 363, 366, 925
FokI GGATG 2 cut(s) 206, 1004
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 7 cut(s) 62, 134, 146, 297, 363, 366, 925
GlaI GCGC 5 cut(s) 23, 176, 283, 359, 361
GluI GCNGC 7 cut(s) 62, 134, 146, 297, 363, 366, 925
GsuI CTGGAG 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 2 cut(s) 113, 416
HapII CCGG 4 cut(s) 102, 203, 223, 603
HgaI GACGC 1 cut(s) 180
HhaI GCGC 5 cut(s) 24, 177, 284, 360, 362
Hin1I GRCGYC 2 cut(s) 191, 1026
Hin1II CATG 6 cut(s) 145, 158, 331, 415, 512, 878
Hin6I GCGC 5 cut(s) 22, 175, 282, 358, 360
HinP1I GCGC 5 cut(s) 22, 175, 282, 358, 360
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 6 cut(s) 35, 287, 620, 779, 878, 957
HpaII CCGG 4 cut(s) 102, 203, 223, 603
HphI GGTGA 1 cut(s) 486
Hpy166II GTNNAC 1 cut(s) 773
Hpy188I TCNGA 5 cut(s) 40, 57, 256, 736, 821
Hpy188III TCNNGA 8 cut(s) 70, 203, 223, 319, 654, 788, 875, 1016
Hpy8I GTNNAC 1 cut(s) 773
Hpy99I CGWCG 2 cut(s) 196, 1022
HpyAV CCTTC 6 cut(s) 103, 496, 546, 695, 801, 1046
HpyCH4III ACNGT 2 cut(s) 556, 673
HpyCH4IV ACGT 3 cut(s) 216, 945, 1026
HpyCH4V TGCA 7 cut(s) 133, 145, 596, 668, 853, 982, 1009
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 85, 119, 142, 921
HpyF3I CTNAG 7 cut(s) 377, 424, 678, 818, 882, 893, 1034
HpySE526I ACGT 3 cut(s) 216, 945, 1026
Hsp92I GRCGYC 2 cut(s) 191, 1026
Hsp92II CATG 6 cut(s) 145, 158, 331, 415, 512, 878
HspAI GCGC 5 cut(s) 22, 175, 282, 358, 360
Kpn2I TCCGGA 2 cut(s) 202, 222
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
LguI GCTCTTC 1 cut(s) 677
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 4 cut(s) 145, 157, 374, 936
MaeII ACGT 3 cut(s) 216, 945, 1026
MaeIII GTNAC 2 cut(s) 269, 673
MalI GATC 7 cut(s) 183, 237, 332, 761, 873, 933, 1061
MboI GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
MboII GAAGA 9 cut(s) 85, 416, 471, 481, 531, 534, 537, 694, 1007
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 759, 931
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 6 cut(s) 50, 164, 196, 349, 419, 591
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 3 cut(s) 44, 614, 773
MmeI TCCRAC 3 cut(s) 18, 279, 928
Mox20I TGGCCA 1 cut(s) 416
MroI TCCGGA 2 cut(s) 202, 222
MscI TGGCCA 1 cut(s) 416
MseI TTAA 3 cut(s) 390, 764, 987
MslI CAYNNNNRTG 2 cut(s) 153, 507
Msp20I TGGCCA 1 cut(s) 416
MspA1I CMGCKG 2 cut(s) 299, 1038
MspI CCGG 4 cut(s) 102, 203, 223, 603
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 1 cut(s) 328
MvnI CGCG 2 cut(s) 177, 360
MwoI GCNNNNNNNGC 5 cut(s) 11, 85, 119, 142, 921
NciI CCSGG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 411
NdeII GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
NlaIII CATG 6 cut(s) 145, 158, 331, 415, 512, 878
NlaIV GGNNCC 2 cut(s) 42, 99
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 673
NspV TTCGAA 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 342
PagI TCATGA 1 cut(s) 874
PauI GCGCGC 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 677
PcsI WCGNNNNNNNCGW 2 cut(s) 473, 1023
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 3 cut(s) 287, 878, 957
PflFI GACNNNGTC 2 cut(s) 34, 623
PinAI ACCGGT 1 cut(s) 602
PkrI GCNGC 7 cut(s) 63, 135, 147, 298, 364, 367, 926
PleI GAGTC 3 cut(s) 43, 614, 773
PpsI GAGTC 3 cut(s) 43, 614, 773
Psp1406I AACGTT 1 cut(s) 945
PspN4I GGNNCC 2 cut(s) 42, 99
PspPI GGNCC 5 cut(s) 97, 112, 519, 692, 798
PspXI VCTCGAGB 1 cut(s) 342
PsuI RGATCY 2 cut(s) 759, 931
PsyI GACNNNGTC 2 cut(s) 34, 623
PteI GCGCGC 1 cut(s) 358
RsaI GTAC 2 cut(s) 244, 774
RsaNI GTAC 2 cut(s) 243, 773
RseI CAYNNNNRTG 2 cut(s) 153, 507
SapI GCTCTTC 1 cut(s) 677
SaqAI TTAA 3 cut(s) 390, 764, 987
SatI GCNGC 7 cut(s) 62, 134, 146, 297, 363, 366, 925
Sau3AI GATC 7 cut(s) 181, 235, 330, 759, 871, 931, 1059
Sau96I GGNCC 5 cut(s) 97, 112, 519, 692, 798
SchI GAGTC 3 cut(s) 44, 614, 773
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 170
SgrAI CRCCGGYG 1 cut(s) 602
SinI GGWCC 4 cut(s) 97, 519, 692, 798
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 153, 507
SmlI CTYRAG 3 cut(s) 342, 902, 965
SmoI CTYRAG 3 cut(s) 342, 902, 965
Sse9I AATT 6 cut(s) 50, 164, 196, 349, 419, 591
SsiI CCGC 8 cut(s) 61, 64, 297, 310, 366, 513, 915, 1038
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 2 cut(s) 411, 456
TaaI ACNGT 2 cut(s) 556, 673
TaiI ACGT 3 cut(s) 219, 948, 1029
TaqI TCGA 7 cut(s) 69, 170, 194, 343, 746, 845, 1017
TaqII GACCGA 1 cut(s) 536
TasI AATT 6 cut(s) 50, 164, 196, 349, 419, 591
TauI GCSGC 3 cut(s) 64, 299, 368
TfiI GAWTC 3 cut(s) 287, 878, 957
Tru1I TTAA 3 cut(s) 390, 764, 987
Tru9I TTAA 3 cut(s) 390, 764, 987
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 4 cut(s) 133, 145, 362, 924
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 419, 575, 1008
TspGWI ACGGA 2 cut(s) 47, 165
TspRI CASTG 1 cut(s) 682
Tth111I GACNNNGTC 2 cut(s) 34, 623
VpaK11BI GGWCC 4 cut(s) 97, 519, 692, 798
XapI RAATTY 3 cut(s) 50, 196, 419
XhoI CTCGAG 1 cut(s) 342
ZraI GACGTC 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.