Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Forward (+)

63163114 .. 63168360

Gene Structure 5247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG447100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGAGATCTTGCAGGAGCTAATTGATCACAGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGCCAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACGCTCATGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGATGTGCTCATTCGACAGTGGCAGAAAGAGCAAGGTCCAAAATTTGCACTTGTCTTCCGAGTGTTGCCAGATAACAAAACACTCAAACCGTCTTTAACCACGACCCTTAAACATTACTTTGGTGATTTTTCTTTCTTCGAAGATTTCCAACACAATGATCCAATTACAGAATTACTATATACATCTCCTTTTCTTGAATGCTCAACACCAATTGCATGCTCTGCAACTCAGAATCCAATCGAGTTTTCATGTACTATATACATTCTCTCGATGTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

210

Amino Acids

24.1

Weight (kDa)

7.61

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	57 - 114	4.6e-12	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AclWI	GGATC	2 cut(s)	216, 503
AcoI	YGGCCR	2 cut(s)	270, 339
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	4 cut(s)	76, 112, 139, 283
AluI	AGCT	4 cut(s)	76, 112, 139, 283
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	216, 503
AoxI	GGCC	3 cut(s)	200, 270, 339
ApoI	RAATTY	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	53, 485
AsuII	TTCGAA	3 cut(s)	172, 196, 489
AvaII	GGWCC	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmsI	GCATC	2 cut(s)	69, 250
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	235
Bpu14I	TTCGAA	3 cut(s)	172, 196, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	40, 59
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	200, 593
BseNI	ACTGG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	202, 272, 341
BsiHKAI	GWGCWC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	3 cut(s)	202, 272, 341
Bsp119I	TTCGAA	3 cut(s)	172, 196, 489
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	126, 145, 208, 508
BspANI	GGCC	3 cut(s)	202, 272, 341
BspCNI	CTCAG	2 cut(s)	199, 592
BspFNI	CGCG	1 cut(s)	299
BspPI	GGATC	2 cut(s)	216, 503
BspT104I	TTCGAA	3 cut(s)	172, 196, 489
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	126, 145, 208, 508
Bst4CI	ACNGT	4 cut(s)	152, 220, 369, 441
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	3 cut(s)	172, 196, 489
BstC8I	GCNNGC	2 cut(s)	333, 568
BstDEI	CTNAG	2 cut(s)	186, 579
BstF5I	GGATG	2 cut(s)	40, 59
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	4 cut(s)	129, 148, 211, 511
BstMBI	GATC	4 cut(s)	126, 145, 208, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 379, 572
BstNSI	RCATGY	1 cut(s)	570
BstUI	CGCG	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	126, 208
BstYI	RGATCY	2 cut(s)	126, 208
BsuRI	GGCC	3 cut(s)	202, 272, 341
BtsCI	GGATG	2 cut(s)	40, 59
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	333, 568
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	4 cut(s)	155, 317, 567, 600
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	2 cut(s)	186, 579
DpnI	GATC	4 cut(s)	128, 147, 210, 510
DpnII	GATC	4 cut(s)	126, 145, 208, 508
EaeI	YGGCCR	2 cut(s)	270, 339
Eco147I	AGGCCT	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	386
FaeI	CATG	4 cut(s)	158, 320, 570, 603
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	4 cut(s)	154, 316, 566, 599
FbaI	TGATCA	1 cut(s)	145
FokI	GGATG	2 cut(s)	46, 47
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	3 cut(s)	202, 272, 341
Hin1II	CATG	4 cut(s)	158, 320, 570, 603
HindIII	AAGCTT	2 cut(s)	110, 281
HinfI	GANTC	5 cut(s)	11, 174, 182, 346, 583
HphI	GGTGA	2 cut(s)	53, 485
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	410, 582
Hpy188III	TCNNGA	4 cut(s)	188, 350, 545, 619
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	3 cut(s)	15, 192, 298
HpyCH4III	ACNGT	4 cut(s)	152, 220, 369, 441
HpyCH4V	TGCA	5 cut(s)	133, 335, 398, 566, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 379, 572
HpyF3I	CTNAG	2 cut(s)	186, 579
Hsp92II	CATG	4 cut(s)	158, 320, 570, 603
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	126, 145, 208, 508
LmnI	GCTCC	2 cut(s)	97, 136
LpnPI	CCDG	6 cut(s)	75, 119, 173, 192, 265, 432
LweI	GCATC	2 cut(s)	69, 250
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	128, 147, 210, 510
MboI	GATC	4 cut(s)	126, 145, 208, 508
MboII	GAAGA	3 cut(s)	397, 478, 503
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	126, 208
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	6 cut(s)	141, 392, 513, 521, 561, 628
MluI	ACGCGT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	213, 523
MnlI	CCTC	2 cut(s)	25, 184
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	446, 459, 627
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	341
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	554
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	269, 379, 572
NdeII	GATC	4 cut(s)	126, 145, 208, 508
NlaIII	CATG	4 cut(s)	158, 320, 570, 603
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	570
NspV	TTCGAA	3 cut(s)	172, 196, 489
PaeI	GCATGC	1 cut(s)	570
PceI	AGGCCT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	11, 174, 182, 346, 583
PspPI	GGNCC	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	126, 208
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	446, 459, 627
Sau3AI	GATC	4 cut(s)	126, 145, 208, 508
Sau96I	GGNCC	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	8 cut(s)	78, 94, 114, 141, 195, 285, 290, 388
SfaNI	GCATC	2 cut(s)	69, 250
SfuI	TTCGAA	3 cut(s)	172, 196, 489
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	570
Sse9I	AATT	6 cut(s)	141, 392, 513, 521, 561, 628
SseBI	AGGCCT	1 cut(s)	202
StuI	AGGCCT	1 cut(s)	202
TaaI	ACNGT	4 cut(s)	152, 220, 369, 441
TaqI	TCGA	6 cut(s)	172, 196, 364, 489, 591, 620
TasI	AATT	6 cut(s)	141, 392, 513, 521, 561, 628
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	5 cut(s)	11, 174, 182, 346, 583
Tru1I	TTAA	3 cut(s)	446, 459, 627
Tru9I	TTAA	3 cut(s)	446, 459, 627
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	45, 588
TspRI	CASTG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.