Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Reverse (-)

26663431 .. 26664100

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0254300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGTCCTCGAGCTCAGCCGACCAGAGAGAAGAAGAACGACACCCTTTGTTGCACAGCCCCTGCCATTTCTTCGACCAACTCATCACCGCTTGCCTCAAGTGCCTCGGACTTGATCATGACTTCTCCTCCTCCGCCGCTGCTGGAGAGACAAAGGCAGATCAGCATCAACAGTACCCTCCTCCGCAGACCGAAATGGAAATGAAATTCAGGGAAGAGGTTGTTGTGACAGCCACAGGTAATGCAAGGTGGACAAGAGCGTTGAGAGTGAAACGGCCTTCGCTAGGCTCTGGTTCAGGTCCTCAGATTAACCGTGCTTCGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

6.18

Isoelectric Point (pI)

64.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep1_7	PF17232	9 - 55	6.2e-08	Elicitor peptide 1-7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	90, 135, 138, 185
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	138, 141
BlpI	GCTNAGC	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	139, 142
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	299
BmsI	GCATC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	30, 317
BseRI	GAGGAG	3 cut(s)	118, 121, 171
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	115, 160
Bsp1720I	GCTNAGC	1 cut(s)	16
BspACI	CCGC	4 cut(s)	90, 135, 138, 185
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	29, 316
BspHI	TCATGA	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	115, 160
Bst4CI	ACNGT	2 cut(s)	174, 314
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	16, 303
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	118, 163
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	115, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	63
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	6 cut(s)	15, 20, 60, 233, 277, 288
CviKI_1	RGCY	6 cut(s)	15, 20, 60, 233, 277, 288
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	16, 303
DpnI	GATC	2 cut(s)	117, 162
DpnII	GATC	2 cut(s)	115, 160
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	1 cut(s)	122
FaiI	YATR	1 cut(s)	120
FatI	CATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	138, 141
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	138, 141
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	138, 141
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	122
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	110, 306
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	174, 314
HpyCH4V	TGCA	2 cut(s)	55, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	16, 303
Hsp92II	CATG	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	115, 160
LpnPI	CCDG	7 cut(s)	38, 76, 129, 196, 222, 276, 282
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	117, 162
MboI	GATC	2 cut(s)	115, 160
MboII	GAAGA	4 cut(s)	44, 47, 64, 227
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	9 cut(s)	19, 107, 116, 139, 142, 189, 192, 211, 312
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	115, 160
NlaIII	CATG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	10
PagI	TCATGA	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	139, 142
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	138, 141
Sau3AI	GATC	2 cut(s)	115, 160
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	5 cut(s)	17, 222, 241, 251, 301
SfaNI	GCATC	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	10, 98
SmoI	CTYRAG	2 cut(s)	10, 98
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	4 cut(s)	90, 135, 138, 185
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	174, 314
TaqI	TCGA	2 cut(s)	11, 75
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	10
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.