Rh2DG458100

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000736
Physical Location & Seq
Forward (+)
66259998 .. 66261026
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG458100.1

Sequence Viewer

Length: 1029 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTCATGGTATTACTCTCTTGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTGTGCTAGTTTGGATAGGTCTGTGTCTGCTATTAGTCCTGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTACTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTACTGGATAAAGATAAGGAACACCGAATCAAGCGCATCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGACAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTTATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGGTGAAATCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

342

Amino Acids

39.04

Weight (kDa)

9.21

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 114 1e-10 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 615
AciI CCGC 2 cut(s) 123, 615
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 2 cut(s) 798, 989
AfaI GTAC 2 cut(s) 582, 663
AfiI CCNNNNNNNGG 3 cut(s) 89, 631, 712
AflIII ACRYGT 2 cut(s) 297, 970
AgsI TTSAA 8 cut(s) 405, 412, 482, 812, 829, 857, 952, 968
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 760
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 760
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 516, 616
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 2 cut(s) 798, 989
AspLEI GCGC 2 cut(s) 615, 696
AspS9I GGNCC 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 53, 140, 1028
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 762
BbsI GAAGAC 2 cut(s) 393, 470
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 805
BceAI ACGGC 1 cut(s) 788
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 396, 429
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 850
BisI GCNGC 2 cut(s) 616, 819
BlsI GCNGC 2 cut(s) 617, 820
BmcAI AGTACT 2 cut(s) 582, 663
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 517
BmsI GCATC 5 cut(s) 69, 250, 705, 894, 951
BpiI GAAGAC 2 cut(s) 393, 470
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 776
Bpu14I TTCGAA 2 cut(s) 172, 196
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 631, 712
Bse1I ACTGG 3 cut(s) 252, 588, 669
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 6 cut(s) 40, 59, 527, 696, 964, 991
BseLI CCNNNNNNNGG 3 cut(s) 89, 631, 712
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 252, 588, 669
BseXI GCAGC 1 cut(s) 805
BsgI GTGCAG 4 cut(s) 597, 678, 759, 895
Bsh1236I CGCG 2 cut(s) 299, 615
BshFI GGCC 5 cut(s) 202, 272, 341, 518, 618
BsiHKAI GWGCWC 1 cut(s) 762
BslI CCNNNNNNNGG 3 cut(s) 89, 631, 712
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 5 cut(s) 202, 272, 341, 518, 618
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 4 cut(s) 126, 145, 208, 850
BspACI CCGC 2 cut(s) 123, 615
BspANI GGCC 5 cut(s) 202, 272, 341, 518, 618
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 615
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 3 cut(s) 252, 588, 669
BssMI GATC 4 cut(s) 126, 145, 208, 850
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 4 cut(s) 540, 807, 947, 975
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 776
BstF5I GGATG 6 cut(s) 40, 59, 527, 696, 964, 991
BstFNI CGCG 2 cut(s) 299, 615
BstHHI GCGC 2 cut(s) 615, 696
BstKTI GATC 4 cut(s) 129, 148, 211, 853
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 4 cut(s) 126, 145, 208, 850
BstMWI GCNNNNNNNGC 2 cut(s) 269, 882
BstNSI RCATGY 1 cut(s) 974
BstUI CGCG 2 cut(s) 299, 615
BstV1I GCAGC 1 cut(s) 805
BstV2I GAAGAC 2 cut(s) 393, 470
BstX2I RGATCY 3 cut(s) 126, 208, 850
BstYI RGATCY 3 cut(s) 126, 208, 850
BsuRI GGCC 5 cut(s) 202, 272, 341, 518, 618
BtsCI GGATG 6 cut(s) 40, 59, 527, 696, 964, 991
BtsI GCAGTG 2 cut(s) 747, 883
BtsIMutI CAGTG 2 cut(s) 747, 883
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 2 cut(s) 615, 696
Cfr13I GGNCC 1 cut(s) 516
CseI GACGC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 581, 662
CviAII CATG 3 cut(s) 155, 303, 971
CviQI GTAC 2 cut(s) 581, 662
DdeI CTNAG 3 cut(s) 186, 369, 776
DpnI GATC 4 cut(s) 128, 147, 210, 852
DpnII GATC 4 cut(s) 126, 145, 208, 850
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 4 cut(s) 540, 807, 947, 975
EarI CTCTTC 4 cut(s) 540, 807, 947, 975
Ecl136II GAGCTC 1 cut(s) 760
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 762
Eco53kI GAGCTC 1 cut(s) 760
EcoICRI GAGCTC 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 762
FaeI CATG 3 cut(s) 158, 306, 974
FaiI YATR 6 cut(s) 156, 206, 304, 753, 972, 978
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 154, 302, 970
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 616, 819
FokI GGATG 6 cut(s) 46, 47, 514, 683, 971, 998
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 2 cut(s) 616, 819
FspBI CTAG 2 cut(s) 396, 429
GlaI GCGC 2 cut(s) 614, 695
GluI GCNGC 2 cut(s) 616, 819
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 518, 618
HgaI GACGC 1 cut(s) 288
HhaI GCGC 2 cut(s) 615, 696
Hin1II CATG 3 cut(s) 158, 306, 974
Hin6I GCGC 2 cut(s) 613, 694
HinP1I GCGC 2 cut(s) 613, 694
HincII GTYRAC 1 cut(s) 924
HindII GTYRAC 1 cut(s) 924
HindIII AAGCTT 3 cut(s) 110, 281, 414
HphI GGTGA 3 cut(s) 53, 140, 1028
Hpy166II GTNNAC 2 cut(s) 216, 924
Hpy188I TCNGA 1 cut(s) 764
Hpy188III TCNNGA 4 cut(s) 188, 389, 531, 835
Hpy8I GTNNAC 2 cut(s) 216, 924
HpyAV CCTTC 7 cut(s) 15, 192, 298, 544, 625, 706, 1007
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4V TGCA 6 cut(s) 133, 335, 578, 659, 740, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 882
HpyF3I CTNAG 3 cut(s) 186, 369, 776
Hsp92II CATG 3 cut(s) 158, 306, 974
HspAI GCGC 2 cut(s) 613, 694
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 850
LmnI GCTCC 4 cut(s) 97, 136, 757, 765
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 5 cut(s) 69, 250, 705, 894, 951
MaeI CTAG 2 cut(s) 396, 429
MaeIII GTNAC 2 cut(s) 41, 902
MalI GATC 4 cut(s) 128, 147, 210, 852
MboI GATC 4 cut(s) 126, 145, 208, 850
MboII GAAGA 8 cut(s) 393, 470, 557, 824, 845, 964, 992, 1022
MflI RGATCY 3 cut(s) 126, 208, 850
MhlI GDGCHC 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 4 cut(s) 141, 377, 798, 989
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 506, 516, 798, 808, 948, 976
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 153, 975
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 615
MwoI GCNNNNNNNGC 2 cut(s) 269, 882
NdeII GATC 4 cut(s) 126, 145, 208, 850
NlaIII CATG 3 cut(s) 158, 306, 974
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 974
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 970
PfeI GAWTC 9 cut(s) 11, 174, 182, 346, 606, 687, 765, 838, 896
PkrI GCNGC 2 cut(s) 617, 820
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PscI ACATGT 1 cut(s) 970
Psp124BI GAGCTC 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 1 cut(s) 516
PsuI RGATCY 3 cut(s) 126, 208, 850
RsaI GTAC 2 cut(s) 582, 663
RsaNI GTAC 2 cut(s) 581, 662
RseI CAYNNNNRTG 2 cut(s) 153, 975
SacI GAGCTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 616, 819
Sau3AI GATC 4 cut(s) 126, 145, 208, 850
Sau96I GGNCC 1 cut(s) 516
ScaI AGTACT 2 cut(s) 582, 663
SchI GAGTC 1 cut(s) 475
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 5 cut(s) 69, 250, 705, 894, 951
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 2 cut(s) 153, 975
Sse9I AATT 4 cut(s) 141, 377, 798, 989
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 123, 615
SspMI CTAG 2 cut(s) 396, 429
SstI GAGCTC 1 cut(s) 762
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaqI TCGA 4 cut(s) 172, 196, 823, 834
TasI AATT 4 cut(s) 141, 377, 798, 989
TatI WGTACW 2 cut(s) 580, 661
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 9 cut(s) 11, 174, 182, 346, 606, 687, 765, 838, 896
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 2 cut(s) 747, 883
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 818
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 45, 975, 993, 1002
TspGWI ACGGA 1 cut(s) 1013
TspRI CASTG 2 cut(s) 747, 883
XapI RAATTY 2 cut(s) 798, 989
XceI RCATGY 1 cut(s) 974
XspI CTAG 2 cut(s) 396, 429
ZrmI AGTACT 2 cut(s) 582, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.