Rh2AG376000

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000736
Physical Location & Seq
Reverse (-)
56175469 .. 56176404
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG376000.1

Sequence Viewer

Length: 936 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGTTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACGCTCATGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTGTGCTAGTTTGGATAGGTCTGTGTCTCCTTTTAGTCCAGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAAGATGTTGATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGGTGAAATCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

311

Amino Acids

35.64

Weight (kDa)

9.02

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 114 2.1e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 603
AciI CCGC 2 cut(s) 123, 603
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 2 cut(s) 705, 896
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 8 cut(s) 405, 412, 482, 719, 736, 764, 859, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 667
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 667
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 2 cut(s) 234, 453
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 507, 604
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 705, 896
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 3 cut(s) 53, 140, 935
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 393, 470
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 712
BceAI ACGGC 1 cut(s) 695
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 453
BfaI CTAG 2 cut(s) 396, 429
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 757
BisI GCNGC 2 cut(s) 604, 726
BlsI GCNGC 2 cut(s) 605, 727
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 4 cut(s) 69, 250, 801, 858
BpiI GAAGAC 2 cut(s) 393, 470
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 683
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 1 cut(s) 857
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 252, 461
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 5 cut(s) 40, 59, 518, 871, 898
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 252, 461
BseXI GCAGC 1 cut(s) 712
BsgI GTGCAG 3 cut(s) 588, 666, 802
Bsh1236I CGCG 2 cut(s) 299, 603
BshFI GGCC 5 cut(s) 202, 272, 341, 509, 606
BsiHKAI GWGCWC 1 cut(s) 669
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 234, 453
BsnI GGCC 5 cut(s) 202, 272, 341, 509, 606
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 126, 145, 208, 757
BspACI CCGC 2 cut(s) 123, 603
BspANI GGCC 5 cut(s) 202, 272, 341, 509, 606
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 603
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 252, 461
BssMI GATC 4 cut(s) 126, 145, 208, 757
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 5 cut(s) 531, 609, 714, 854, 882
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 683
BstF5I GGATG 5 cut(s) 40, 59, 518, 871, 898
BstFNI CGCG 2 cut(s) 299, 603
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 4 cut(s) 129, 148, 211, 760
BstMAI GTCTC 2 cut(s) 234, 453
BstMBI GATC 4 cut(s) 126, 145, 208, 757
BstMWI GCNNNNNNNGC 2 cut(s) 269, 789
BstUI CGCG 2 cut(s) 299, 603
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 2 cut(s) 393, 470
BstX2I RGATCY 3 cut(s) 126, 208, 757
BstYI RGATCY 3 cut(s) 126, 208, 757
BsuRI GGCC 5 cut(s) 202, 272, 341, 509, 606
BtsCI GGATG 5 cut(s) 40, 59, 518, 871, 898
BtsI GCAGTG 3 cut(s) 576, 654, 790
BtsIMutI CAGTG 4 cut(s) 468, 576, 654, 790
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 507
CviAII CATG 2 cut(s) 155, 317
DdeI CTNAG 3 cut(s) 186, 369, 683
DpnI GATC 4 cut(s) 128, 147, 210, 759
DpnII GATC 4 cut(s) 126, 145, 208, 757
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 5 cut(s) 531, 609, 714, 854, 882
EarI CTCTTC 5 cut(s) 531, 609, 714, 854, 882
Ecl136II GAGCTC 1 cut(s) 667
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 669
FaeI CATG 2 cut(s) 158, 320
FaiI YATR 5 cut(s) 156, 206, 304, 318, 660
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 2 cut(s) 154, 316
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 604, 726
FokI GGATG 5 cut(s) 46, 47, 505, 878, 905
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 2 cut(s) 604, 726
FspBI CTAG 2 cut(s) 396, 429
GlaI GCGC 1 cut(s) 602
GluI GCNGC 2 cut(s) 604, 726
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 509, 606
HhaI GCGC 1 cut(s) 603
Hin1II CATG 2 cut(s) 158, 320
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HindIII AAGCTT 3 cut(s) 110, 281, 414
HinfI GANTC 9 cut(s) 11, 174, 182, 346, 466, 594, 672, 745, 803
HphI GGTGA 3 cut(s) 53, 140, 935
Hpy166II GTNNAC 2 cut(s) 216, 831
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 4 cut(s) 188, 389, 522, 742
Hpy8I GTNNAC 2 cut(s) 216, 831
HpyAV CCTTC 6 cut(s) 15, 192, 298, 535, 613, 914
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4V TGCA 5 cut(s) 133, 335, 569, 647, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 789
HpyF3I CTNAG 3 cut(s) 186, 369, 683
Hsp92II CATG 2 cut(s) 158, 320
HspAI GCGC 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 757
LmnI GCTCC 4 cut(s) 97, 136, 664, 672
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 4 cut(s) 69, 250, 801, 858
MaeI CTAG 2 cut(s) 396, 429
MaeIII GTNAC 2 cut(s) 41, 809
MalI GATC 4 cut(s) 128, 147, 210, 759
MboI GATC 4 cut(s) 126, 145, 208, 757
MflI RGATCY 3 cut(s) 126, 208, 757
MhlI GDGCHC 1 cut(s) 669
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 4 cut(s) 141, 377, 705, 896
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 497, 507, 705, 715, 855, 883
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 603
MwoI GCNNNNNNNGC 2 cut(s) 269, 789
NdeII GATC 4 cut(s) 126, 145, 208, 757
NlaIII CATG 2 cut(s) 158, 320
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 41
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 594, 672, 745, 803
PkrI GCNGC 2 cut(s) 605, 727
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 507
PsuI RGATCY 3 cut(s) 126, 208, 757
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 604, 726
Sau3AI GATC 4 cut(s) 126, 145, 208, 757
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 1 cut(s) 475
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 4 cut(s) 69, 250, 801, 858
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 836
SmoI CTYRAG 1 cut(s) 836
Sse9I AATT 4 cut(s) 141, 377, 705, 896
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 123, 603
SspMI CTAG 2 cut(s) 396, 429
SstI GAGCTC 1 cut(s) 669
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaqI TCGA 4 cut(s) 172, 196, 730, 741
TasI AATT 4 cut(s) 141, 377, 705, 896
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 594, 672, 745, 803
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 4 cut(s) 468, 576, 654, 790
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 45, 882, 900, 909
TspGWI ACGGA 1 cut(s) 920
TspRI CASTG 4 cut(s) 468, 576, 654, 790
XapI RAATTY 2 cut(s) 705, 896
XspI CTAG 2 cut(s) 396, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.