pycom09g11030

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000736
Physical Location & Seq
Forward (+)
9176388 .. 9177861
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11030.1

Sequence Viewer

Length: 1176 bp
ATGGCTTGGTCTGCGAGAAAGCGCGGGCAGATGGAATCGGAATCGGAGCCCTTTGAATTTCAGAGGCGGTGGGCCGAGAAGAGGCAAAAGAGGCGGGGCTTGGACCCCAAATTGAAGGCCTGCTGTGCTGAAATCTTGCAGCTTCTGATGCAGCACGGACATGGGAAGCAATTTGCGAAGCGCGTTGATCCTGTGGCGTCGAATTTGCCGGATTATCTCTACGTCATCCGGAAGCCGATTGCTCTGGGTACTATCAAGTCCGACTTGGAGAAGGGTTACTACTCCAGCGCCGATTCCTTTGCCGCTGATGTGAGGCGGGTGTTCTTGAATGCCATGATCTATTACCCTCGAGGGAATTATGTCCGCGCAGCCGCCCAGCATCTCAGTAATCTCTTTAACACAAAGTGGGAAGAAACCATGGCCAAATTCTCAGTTCATCGTCCTCTGCCACCGCCAAAGGCCAAGGGTTTGTCGTCTTCACCGTCCTTCTCACCTGAACACATACATGGCGGTAAGACCGAGACCTGTTCTCCTTCTTCTTCTACTTCTACGGTTATTCACAGTCGAGGGCTTTTTGGGGTTCATTCAATTGCAAACACCGATGGCAAAGACAATGACTTTGTCATTGCCACTCTCGTTGTTGAACATTCTGGACATTCAGTTGCAACTGTCACTGAGAAGAGCAGAGGACCAAGAGAAGGGAGAGTTGAGTTGCTGAAGCTTCGATTTTCAGATACATTGTCGAAAGCTAACAAGATCTTAAAAGGTCCACCTGACACTCCTCCTGAACAGAGGACCAAGAGAAGGGAGGCCCTCAGAAAATCAGCTCGGCGCAGGAGTTCAAGTATGCAAAAGTCTGTGATGTTTGATCATGATTCAAAACACTATCTCAGGGAACTTGAGAAGTTGTGCGGGTGTGGCAGCAAAGATCCTTTCCTCAACATTCTACAAGGATTTCCTCTCAAGGACTTGGGTTTGCACATTAAGGATGAAGAATATGACTTGCAAGGTCTTGACGAGGACGTCTTTCTCAACAGAGATTGGGAGGAAGTAATTGATGAATCTCTTCTTCTTCGGCCTCTCAGTCCCCTGTGTTCTGTTTCAAAGTGGAATGACTCCATAATTTCAATTCAGTTTGGAATGATTATTAGTTTGCTGTGCATTATGGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

392

Amino Acids

44.19

Weight (kDa)

9.29

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 42 - 126 3.4e-16 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1022
AatII GACGTC 1 cut(s) 1026
AbsI CCTCGAGG 1 cut(s) 348
AccII CGCG 3 cut(s) 24, 183, 366
AccIII TCCGGA 1 cut(s) 228
AclWI GGATC 2 cut(s) 182, 923
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 56, 202, 425
AcuI CTGAAG 1 cut(s) 737
AcyI GRCGYC 2 cut(s) 197, 1023
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 3 cut(s) 81, 698, 804
AgsI TTSAA 9 cut(s) 56, 115, 328, 588, 644, 843, 879, 1104, 1128
AluBI AGCT 4 cut(s) 142, 721, 749, 827
AluI AGCT 4 cut(s) 142, 721, 749, 827
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 2 cut(s) 182, 923
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 6 cut(s) 72, 117, 420, 459, 810, 1076
ApeKI GCWGC 4 cut(s) 139, 151, 368, 921
ApoI RAATTY 3 cut(s) 56, 202, 425
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
Asp700I GAANNNNTTC 1 cut(s) 1065
AspLEI GCGC 5 cut(s) 24, 183, 290, 368, 834
AspS9I GGNCC 6 cut(s) 72, 103, 689, 767, 795, 811
AsuHPI GGTGA 2 cut(s) 471, 483
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 4 cut(s) 103, 689, 767, 795
BalI TGGCCA 1 cut(s) 422
BanII GRGCYC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 4 cut(s) 151, 163, 380, 933
BccI CCATC 2 cut(s) 25, 596
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 291
BglII AGATCT 1 cut(s) 756
BisI GCNGC 6 cut(s) 140, 152, 303, 369, 372, 922
BlsI GCNGC 6 cut(s) 141, 153, 304, 370, 373, 923
Bme18I GGWCC 4 cut(s) 103, 689, 767, 795
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 6 cut(s) 72, 103, 689, 767, 795, 811
BmiI GGNNCC 2 cut(s) 48, 105
BmsI GCATC 2 cut(s) 138, 388
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 920, 947
BsaHI GRCGYC 2 cut(s) 197, 1023
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 417, 462
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 4 cut(s) 514, 544, 829, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 698, 804
Bse3DI GCAATG 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 417, 462
BseGI GGATG 2 cut(s) 225, 994
BseLI CCNNNNNNNGG 3 cut(s) 81, 698, 804
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 6 cut(s) 397, 444, 666, 829, 904, 1096
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 4 cut(s) 151, 163, 380, 933
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 3 cut(s) 24, 183, 366
BshFI GGCC 6 cut(s) 74, 119, 422, 461, 812, 1078
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 209, 229
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 3 cut(s) 81, 698, 804
BsmAI GTCTC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 1071
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 6 cut(s) 74, 119, 422, 461, 812, 1078
Bso31I GGTCTC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 5 cut(s) 187, 336, 756, 868, 928
Bsp19I CCATGG 1 cut(s) 417
BspANI GGCC 6 cut(s) 74, 119, 422, 461, 812, 1078
BspCNI CTCAG 6 cut(s) 396, 443, 667, 828, 903, 1095
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 3 cut(s) 24, 183, 366
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 2 cut(s) 48, 105
BspPI GGATC 2 cut(s) 182, 923
BspQI GCTCTTC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 624
BssECI CCNNGG 2 cut(s) 417, 462
BssMI GATC 5 cut(s) 187, 336, 756, 868, 928
BssNI GRCGYC 2 cut(s) 197, 1023
BssT1I CCWWGG 2 cut(s) 417, 462
Bst4CI ACNGT 4 cut(s) 483, 553, 563, 670
Bst6I CTCTTC 3 cut(s) 74, 674, 1071
BstACI GRCGYC 2 cut(s) 197, 1023
BstC8I GCNNGC 2 cut(s) 26, 121
BstDEI CTNAG 6 cut(s) 383, 430, 675, 815, 890, 1082
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 225, 994
BstFNI CGCG 3 cut(s) 24, 183, 366
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 5 cut(s) 24, 183, 290, 368, 834
BstKTI GATC 5 cut(s) 190, 339, 759, 871, 931
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 5 cut(s) 187, 336, 756, 868, 928
BstMWI GCNNNNNNNGC 6 cut(s) 11, 91, 125, 148, 918, 1167
BstUI CGCG 3 cut(s) 24, 183, 366
BstV1I GCAGC 4 cut(s) 151, 163, 380, 933
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 2 cut(s) 756, 928
BstYI RGATCY 2 cut(s) 756, 928
BsuRI GGCC 6 cut(s) 74, 119, 422, 461, 812, 1078
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 225, 994
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 2 cut(s) 26, 121
CaiI CAGNNNCTG 1 cut(s) 145
CciI TCATGA 1 cut(s) 871
CfoI GCGC 5 cut(s) 24, 183, 290, 368, 834
Cfr13I GGNCC 6 cut(s) 72, 103, 689, 767, 795, 811
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CviAII CATG 5 cut(s) 161, 334, 418, 506, 872
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 6 cut(s) 383, 430, 675, 815, 890, 1082
DpnI GATC 5 cut(s) 189, 338, 758, 870, 930
DpnII GATC 5 cut(s) 187, 336, 756, 868, 928
DraIII CACNNNGTG 1 cut(s) 405
DrdI GACNNNNNNGTC 1 cut(s) 1022
DseDI GACNNNNNNGTC 1 cut(s) 1022
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 3 cut(s) 74, 674, 1071
EarI CTCTTC 3 cut(s) 74, 674, 1071
Eco130I CCWWGG 2 cut(s) 417, 462
Eco147I AGGCCT 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 4 cut(s) 103, 689, 767, 795
Eco57I CTGAAG 1 cut(s) 737
Eco88I CYCGRG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 811
EcoT14I CCWWGG 2 cut(s) 417, 462
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 417, 462
FaeI CATG 5 cut(s) 164, 337, 421, 509, 875
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 1071
FatI CATG 5 cut(s) 160, 333, 417, 505, 871
FauI CCCGC 4 cut(s) 17, 87, 309, 905
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 6 cut(s) 140, 152, 303, 369, 372, 922
FokI GGATG 2 cut(s) 212, 1001
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 6 cut(s) 140, 152, 303, 369, 372, 922
GlaI GCGC 5 cut(s) 23, 182, 289, 367, 833
GluI GCNGC 6 cut(s) 140, 152, 303, 369, 372, 922
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 268
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 6 cut(s) 74, 119, 422, 461, 812, 1078
HapII CCGG 2 cut(s) 209, 229
HgaI GACGC 1 cut(s) 186
HhaI GCGC 5 cut(s) 24, 183, 290, 368, 834
Hin1I GRCGYC 2 cut(s) 197, 1023
Hin1II CATG 5 cut(s) 164, 337, 421, 509, 875
Hin6I GCGC 5 cut(s) 22, 181, 288, 366, 832
HinP1I GCGC 5 cut(s) 22, 181, 288, 366, 832
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 6 cut(s) 35, 41, 293, 875, 1061, 1115
HpaII CCGG 2 cut(s) 209, 229
HphI GGTGA 2 cut(s) 471, 483
Hpy166II GTNNAC 1 cut(s) 770
Hpy188I TCNGA 7 cut(s) 40, 46, 63, 147, 262, 733, 818
Hpy188III TCNNGA 6 cut(s) 229, 325, 651, 785, 872, 1013
Hpy8I GTNNAC 1 cut(s) 770
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 6 cut(s) 109, 265, 496, 543, 692, 798
HpyCH4III ACNGT 4 cut(s) 483, 553, 563, 670
HpyCH4IV ACGT 2 cut(s) 222, 1023
HpyCH4V TGCA 8 cut(s) 139, 151, 593, 665, 850, 979, 1006, 1161
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 91, 125, 148, 918, 1167
HpyF3I CTNAG 6 cut(s) 383, 430, 675, 815, 890, 1082
HpySE526I ACGT 2 cut(s) 222, 1023
Hsp92I GRCGYC 2 cut(s) 197, 1023
Hsp92II CATG 5 cut(s) 164, 337, 421, 509, 875
HspAI GCGC 5 cut(s) 22, 181, 288, 366, 832
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 5 cut(s) 187, 336, 756, 868, 928
LguI GCTCTTC 1 cut(s) 674
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 4 cut(s) 151, 163, 380, 933
LweI GCATC 2 cut(s) 138, 388
MaeII ACGT 2 cut(s) 222, 1023
MaeIII GTNAC 2 cut(s) 275, 670
MalI GATC 5 cut(s) 189, 338, 758, 870, 930
MboI GATC 5 cut(s) 187, 336, 756, 868, 928
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 2 cut(s) 756, 928
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 422
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 1109
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 422
MroI TCCGGA 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 1065
MscI TGGCCA 1 cut(s) 422
MseI TTAA 3 cut(s) 396, 761, 984
MslI CAYNNNNRTG 2 cut(s) 159, 504
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 209, 229
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 334
MvnI CGCG 3 cut(s) 24, 183, 366
MwoI GCNNNNNNNGC 6 cut(s) 11, 91, 125, 148, 918, 1167
NcoI CCATGG 1 cut(s) 417
NdeII GATC 5 cut(s) 187, 336, 756, 868, 928
NlaIII CATG 5 cut(s) 164, 337, 421, 509, 875
NlaIV GGNNCC 2 cut(s) 48, 105
NmeAIII GCCGAG 2 cut(s) 100, 808
NmuCI GTSAC 1 cut(s) 670
PaeR7I CTCGAG 1 cut(s) 348
PagI TCATGA 1 cut(s) 871
PceI AGGCCT 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 674
PcsI WCGNNNNNNNCGW 1 cut(s) 479
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 1065
PfeI GAWTC 5 cut(s) 35, 41, 293, 875, 1061
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 6 cut(s) 141, 153, 304, 370, 373, 923
PleI GAGTC 1 cut(s) 1109
PpsI GAGTC 1 cut(s) 1109
PspFI CCCAGC 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 48, 105
PspPI GGNCC 6 cut(s) 72, 103, 689, 767, 795, 811
PspXI VCTCGAGB 1 cut(s) 348
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 756, 928
PsyI GACNNNGTC 1 cut(s) 620
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 2 cut(s) 159, 504
SapI GCTCTTC 1 cut(s) 674
SaqAI TTAA 3 cut(s) 396, 761, 984
SatI GCNGC 6 cut(s) 140, 152, 303, 369, 372, 922
Sau3AI GATC 5 cut(s) 187, 336, 756, 868, 928
Sau96I GGNCC 6 cut(s) 72, 103, 689, 767, 795, 811
SchI GAGTC 1 cut(s) 1109
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 2 cut(s) 138, 388
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 4 cut(s) 103, 689, 767, 795
SlaI CTCGAG 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 159, 504
SmlI CTYRAG 3 cut(s) 348, 899, 962
SmoI CTYRAG 3 cut(s) 348, 899, 962
SseBI AGGCCT 1 cut(s) 119
StuI AGGCCT 1 cut(s) 119
StyI CCWWGG 2 cut(s) 417, 462
TaaI ACNGT 4 cut(s) 483, 553, 563, 670
TaiI ACGT 2 cut(s) 225, 1026
TaqI TCGA 5 cut(s) 200, 349, 565, 724, 743
TaqII GACCGA 1 cut(s) 533
TauI GCSGC 2 cut(s) 305, 374
TfiI GAWTC 5 cut(s) 35, 41, 293, 875, 1061
Tru1I TTAA 3 cut(s) 396, 761, 984
Tru9I TTAA 3 cut(s) 396, 761, 984
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 4 cut(s) 139, 151, 368, 921
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 4 cut(s) 425, 572, 1005, 1074
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 679
Tth111I GACNNNGTC 1 cut(s) 620
VpaK11BI GGWCC 4 cut(s) 103, 689, 767, 795
XapI RAATTY 3 cut(s) 56, 202, 425
XhoI CTCGAG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 1065
ZraI GACGTC 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.