Rh2DG456000

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000736
Physical Location & Seq
Reverse (-)
65932471 .. 65933716
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG456000.1

Sequence Viewer

Length: 1110 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGGGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTATTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTCATGGTATTACTCTCTTGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTGTGCTAGTTTGGATAGGTCTGTGTCTGCTATTAGTCCTGTGAGTCCATTAAGTCTTCAACAACTCAACAACAACAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTACTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCACTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGACAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTTATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACGAAATATTACATCCACATATGGTGGCATATCATCATCATCAAGTACATACTGCTACGTAGCAAAATTTATTCTATGTACAAAAATTCATGTAATGGTGACAGAAACTTTGACTGTTATCAAAATGAGATTTCTGCTTTTTGCTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

369

Amino Acids

42.6

Weight (kDa)

9.1

Isoelectric Point (pI)

62.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 64 - 114 1.7e-10 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 615
AciI CCGC 2 cut(s) 123, 615
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 4 cut(s) 717, 908, 1023, 1042
AfaI GTAC 3 cut(s) 582, 1004, 1037
AfiI CCNNNNNNNGG 2 cut(s) 89, 631
AflIII ACRYGT 2 cut(s) 297, 889
AgsI TTSAA 8 cut(s) 405, 412, 482, 731, 748, 776, 871, 887
AjuI GAANNNNNNNTTGG 2 cut(s) 900, 932
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 679
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 679
Alw21I GWGCWC 2 cut(s) 681, 797
Alw26I GTCTC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 793
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 516, 616
ApaLI GTGCAC 1 cut(s) 793
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 4 cut(s) 717, 908, 1023, 1042
ArsI GACNNNNNNTTYG 2 cut(s) 1049, 1081
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 53, 140, 1067
AsuII TTCGAA 2 cut(s) 172, 196
BaeGI GKGCMC 1 cut(s) 797
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 681
BbsI GAAGAC 2 cut(s) 393, 470
Bbv12I GWGCWC 2 cut(s) 681, 797
BbvI GCAGC 1 cut(s) 724
BccI CCATC 1 cut(s) 929
BceAI ACGGC 1 cut(s) 707
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 396, 429
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 769
BisI GCNGC 2 cut(s) 616, 738
BlsI GCNGC 2 cut(s) 617, 739
BmcAI AGTACT 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 517
BmsI GCATC 4 cut(s) 69, 250, 813, 870
BpiI GAAGAC 2 cut(s) 393, 470
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 695
Bpu14I TTCGAA 2 cut(s) 172, 196
BsaAI YACGTR 1 cut(s) 1016
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 631
Bse1I ACTGG 3 cut(s) 252, 588, 802
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 6 cut(s) 40, 59, 527, 883, 910, 969
BseLI CCNNNNNNNGG 2 cut(s) 89, 631
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 252, 588, 802
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 1 cut(s) 724
BsgI GTGCAG 2 cut(s) 597, 678
Bsh1236I CGCG 2 cut(s) 299, 615
BshFI GGCC 5 cut(s) 202, 272, 341, 518, 618
BsiHKAI GWGCWC 2 cut(s) 681, 797
BslI CCNNNNNNNGG 2 cut(s) 89, 631
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 5 cut(s) 202, 272, 341, 518, 618
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 2 cut(s) 681, 797
Bsp1407I TGTACA 1 cut(s) 1035
Bsp143I GATC 4 cut(s) 126, 145, 208, 769
BspACI CCGC 2 cut(s) 123, 615
BspANI GGCC 5 cut(s) 202, 272, 341, 518, 618
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 615
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 1035
BsrI ACTGG 3 cut(s) 252, 588, 802
BssMI GATC 4 cut(s) 126, 145, 208, 769
Bst4CI ACNGT 4 cut(s) 152, 220, 384, 1073
Bst6I CTCTTC 4 cut(s) 540, 726, 866, 894
BstAUI TGTACA 1 cut(s) 1035
BstBAI YACGTR 1 cut(s) 1016
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 695
BstF5I GGATG 6 cut(s) 40, 59, 527, 883, 910, 969
BstFNI CGCG 2 cut(s) 299, 615
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 4 cut(s) 129, 148, 211, 772
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 4 cut(s) 126, 145, 208, 769
BstMWI GCNNNNNNNGC 2 cut(s) 269, 801
BstNSI RCATGY 1 cut(s) 893
BstSLI GKGCMC 1 cut(s) 797
BstSNI TACGTA 1 cut(s) 1016
BstUI CGCG 2 cut(s) 299, 615
BstV1I GCAGC 1 cut(s) 724
BstV2I GAAGAC 2 cut(s) 393, 470
BstX2I RGATCY 3 cut(s) 126, 208, 769
BstYI RGATCY 3 cut(s) 126, 208, 769
BsuRI GGCC 5 cut(s) 202, 272, 341, 518, 618
BtsCI GGATG 6 cut(s) 40, 59, 527, 883, 910, 969
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 666, 795
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 615
Cfr13I GGNCC 1 cut(s) 516
CseI GACGC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 581, 1003, 1036
CviAII CATG 4 cut(s) 155, 303, 890, 1047
CviQI GTAC 3 cut(s) 581, 1003, 1036
DdeI CTNAG 3 cut(s) 186, 369, 695
DpnI GATC 4 cut(s) 128, 147, 210, 771
DpnII GATC 4 cut(s) 126, 145, 208, 769
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 4 cut(s) 540, 726, 866, 894
EarI CTCTTC 4 cut(s) 540, 726, 866, 894
Ecl136II GAGCTC 1 cut(s) 679
Eco105I TACGTA 1 cut(s) 1016
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 681
Eco53kI GAGCTC 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 681
FaeI CATG 4 cut(s) 158, 306, 893, 1050
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 4 cut(s) 154, 302, 889, 1046
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 977
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 616, 738
FokI GGATG 6 cut(s) 46, 47, 514, 890, 917, 956
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 2 cut(s) 616, 738
FspBI CTAG 2 cut(s) 396, 429
GlaI GCGC 1 cut(s) 614
GluI GCNGC 2 cut(s) 616, 738
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 518, 618
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 615
Hin1II CATG 4 cut(s) 158, 306, 893, 1050
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HindIII AAGCTT 3 cut(s) 110, 281, 414
HphI GGTGA 3 cut(s) 53, 140, 1067
Hpy166II GTNNAC 4 cut(s) 216, 795, 843, 950
Hpy188I TCNGA 1 cut(s) 683
Hpy188III TCNNGA 4 cut(s) 188, 389, 531, 754
Hpy8I GTNNAC 4 cut(s) 216, 795, 843, 950
HpyAV CCTTC 5 cut(s) 15, 192, 298, 544, 625
HpyCH4III ACNGT 4 cut(s) 152, 220, 384, 1073
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 5 cut(s) 133, 335, 578, 659, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 801
HpyF3I CTNAG 3 cut(s) 186, 369, 695
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 4 cut(s) 158, 306, 893, 1050
HspAI GCGC 1 cut(s) 613
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 769
LmnI GCTCC 5 cut(s) 97, 136, 676, 684, 1106
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 4 cut(s) 69, 250, 813, 870
MaeI CTAG 2 cut(s) 396, 429
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 3 cut(s) 41, 821, 1055
MalI GATC 4 cut(s) 128, 147, 210, 771
MboI GATC 4 cut(s) 126, 145, 208, 769
MboII GAAGA 9 cut(s) 393, 470, 557, 743, 764, 883, 911, 941, 944
MflI RGATCY 3 cut(s) 126, 208, 769
MhlI GDGCHC 2 cut(s) 681, 797
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 6 cut(s) 141, 377, 717, 908, 1023, 1042
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 475, 955
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 506, 516, 717, 727, 867, 895
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 153, 894
Msp20I TGGCCA 1 cut(s) 341
MvnI CGCG 2 cut(s) 299, 615
MwoI GCNNNNNNNGC 2 cut(s) 269, 801
NdeI CATATG 1 cut(s) 977
NdeII GATC 4 cut(s) 126, 145, 208, 769
NlaIII CATG 4 cut(s) 158, 306, 893, 1050
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 2 cut(s) 41, 1055
NspI RCATGY 1 cut(s) 893
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 889
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 606, 684, 757, 815
PkrI GCNGC 2 cut(s) 617, 739
PleI GAGTC 2 cut(s) 474, 954
PpsI GAGTC 2 cut(s) 474, 954
Ppu21I YACGTR 1 cut(s) 1016
PscI ACATGT 1 cut(s) 889
Psp124BI GAGCTC 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 1 cut(s) 516
PsuI RGATCY 3 cut(s) 126, 208, 769
RsaI GTAC 3 cut(s) 582, 1004, 1037
RsaNI GTAC 3 cut(s) 581, 1003, 1036
RseI CAYNNNNRTG 2 cut(s) 153, 894
SacI GAGCTC 1 cut(s) 681
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 616, 738
Sau3AI GATC 4 cut(s) 126, 145, 208, 769
Sau96I GGNCC 1 cut(s) 516
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 2 cut(s) 475, 955
SduI GDGCHC 2 cut(s) 681, 797
SfaNI GCATC 4 cut(s) 69, 250, 813, 870
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 2 cut(s) 153, 894
SnaBI TACGTA 1 cut(s) 1016
Sse9I AATT 6 cut(s) 141, 377, 717, 908, 1023, 1042
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 123, 615
SspI AATATT 1 cut(s) 965
SspMI CTAG 2 cut(s) 396, 429
SstI GAGCTC 1 cut(s) 681
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 4 cut(s) 152, 220, 384, 1073
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 4 cut(s) 172, 196, 742, 753
TasI AATT 6 cut(s) 141, 377, 717, 908, 1023, 1042
TatI WGTACW 3 cut(s) 580, 1002, 1035
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 606, 684, 757, 815
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 2 cut(s) 666, 802
TseFI GTSAC 2 cut(s) 41, 1055
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 2 cut(s) 41, 1055
TspDTI ATGAA 5 cut(s) 45, 894, 912, 921, 1035
TspRI CASTG 2 cut(s) 666, 802
VneI GTGCAC 1 cut(s) 793
XapI RAATTY 4 cut(s) 717, 908, 1023, 1042
XceI RCATGY 1 cut(s) 893
XspI CTAG 2 cut(s) 396, 429
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.