RchiOBHm_Chr2g0143821

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000736
Physical Location & Seq
Reverse (-)
61440701 .. 61441195
495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51389

Sequence Viewer

Length: 279 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCACGTGCAATGGCCAAGAATCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

92

Amino Acids

10.49

Weight (kDa)

8.8

Isoelectric Point (pI)

66.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 1 cut(s) 262
AcvI CACGTG 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 89
AluBI AGCT 3 cut(s) 76, 112, 139
AluI AGCT 3 cut(s) 76, 112, 139
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 2 cut(s) 200, 262
AsuHPI GGTGA 2 cut(s) 53, 140
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 264
BbrPI CACGTG 1 cut(s) 255
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 234
BmsI GCATC 1 cut(s) 69
Bpu14I TTCGAA 2 cut(s) 172, 196
BsaAI YACGTR 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 265
BseGI GGATG 2 cut(s) 40, 59
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 200
BshFI GGCC 2 cut(s) 202, 264
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 2 cut(s) 202, 264
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp143I GATC 3 cut(s) 126, 145, 208
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 202, 264
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 265
BssMI GATC 3 cut(s) 126, 145, 208
Bst4CI ACNGT 2 cut(s) 152, 220
BstBAI YACGTR 1 cut(s) 255
BstBI TTCGAA 2 cut(s) 172, 196
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 40, 59
BstKTI GATC 3 cut(s) 129, 148, 211
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 126, 145, 208
BstX2I RGATCY 2 cut(s) 126, 208
BstYI RGATCY 2 cut(s) 126, 208
BsuRI GGCC 2 cut(s) 202, 264
BtsCI GGATG 2 cut(s) 40, 59
CviAII CATG 1 cut(s) 155
CviJI RGCY 7 cut(s) 76, 112, 139, 159, 167, 202, 264
CviKI_1 RGCY 7 cut(s) 76, 112, 139, 159, 167, 202, 264
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 128, 147, 210
DpnII GATC 3 cut(s) 126, 145, 208
EaeI YGGCCR 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 202
Eco72I CACGTG 1 cut(s) 255
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 206
FatI CATG 1 cut(s) 154
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 145
FokI GGATG 2 cut(s) 46, 47
HaeIII GGCC 2 cut(s) 202, 264
Hin1II CATG 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 11, 174, 182, 269
HphI GGTGA 2 cut(s) 53, 140
Hpy166II GTNNAC 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 15, 192
HpyCH4III ACNGT 2 cut(s) 152, 220
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 133, 258
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 126, 145, 208
LmnI GCTCC 2 cut(s) 97, 136
LpnPI CCDG 4 cut(s) 75, 119, 173, 192
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 41
MalI GATC 3 cut(s) 128, 147, 210
MboI GATC 3 cut(s) 126, 145, 208
MflI RGATCY 2 cut(s) 126, 208
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 25, 184
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 264
NdeII GATC 3 cut(s) 126, 145, 208
NlaIII CATG 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 41
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 4 cut(s) 11, 174, 182, 269
PmaCI CACGTG 1 cut(s) 255
PmlI CACGTG 1 cut(s) 255
Ppu21I YACGTR 1 cut(s) 255
PspCI CACGTG 1 cut(s) 255
PsuI RGATCY 2 cut(s) 126, 208
RseI CAYNNNNRTG 1 cut(s) 153
Sau3AI GATC 3 cut(s) 126, 145, 208
SetI ASST 6 cut(s) 78, 94, 114, 141, 195, 257
SfaNI GCATC 1 cut(s) 69
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 123
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 2 cut(s) 152, 220
TaiI ACGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 172, 196
TasI AATT 1 cut(s) 141
TfiI GAWTC 4 cut(s) 11, 174, 182, 269
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.