Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Forward (+)

66814143 .. 66814958

Gene Structure 816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG462800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTCATGGTATTACTCTCTTGGAGAAAAACAGCGTGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTGCTAGTTTGGATAGGTCTGTGTCTCTTATTAGTCCAGTGAGTCCATTAGGTCTTCAACAACTCAACAACAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCACTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

271

Amino Acids

30.51

Weight (kDa)

9.58

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	63 - 114	6.7e-11	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	299, 606
AciI	CCGC	2 cut(s)	123, 606
AclWI	GGATC	2 cut(s)	134, 216
AcoI	YGGCCR	2 cut(s)	270, 339
AcsI	RAATTY	1 cut(s)	708
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	405, 412, 479, 722, 739, 767
AluBI	AGCT	6 cut(s)	76, 112, 139, 283, 416, 670
AluI	AGCT	6 cut(s)	76, 112, 139, 283, 416, 670
Alw21I	GWGCWC	2 cut(s)	574, 672
Alw26I	GTCTC	2 cut(s)	234, 450
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	2 cut(s)	134, 216
AoxI	GGCC	5 cut(s)	200, 270, 339, 510, 607
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	53, 140
AsuII	TTCGAA	2 cut(s)	172, 196
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	672
BbsI	GAAGAC	2 cut(s)	393, 467
Bbv12I	GWGCWC	2 cut(s)	574, 672
BbvI	GCAGC	1 cut(s)	715
BceAI	ACGGC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	234, 450
BfaI	CTAG	2 cut(s)	396, 426
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	2 cut(s)	607, 729
BlsI	GCNGC	2 cut(s)	608, 730
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	1 cut(s)	511
BmsI	GCATC	3 cut(s)	69, 250, 804
BpiI	GAAGAC	2 cut(s)	393, 467
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	686
Bpu14I	TTCGAA	2 cut(s)	172, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	252, 458, 579
Bse3DI	GCAATG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	40, 59, 521
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	3 cut(s)	252, 458, 579
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	715
BsgI	GTGCAG	2 cut(s)	669, 805
Bsh1236I	CGCG	2 cut(s)	299, 606
BshFI	GGCC	5 cut(s)	202, 272, 341, 512, 609
BsiHKAI	GWGCWC	2 cut(s)	574, 672
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	234, 450
BsnI	GGCC	5 cut(s)	202, 272, 341, 512, 609
Bsp119I	TTCGAA	2 cut(s)	172, 196
Bsp1286I	GDGCHC	2 cut(s)	574, 672
Bsp143I	GATC	4 cut(s)	126, 145, 208, 760
BspACI	CCGC	2 cut(s)	123, 606
BspANI	GGCC	5 cut(s)	202, 272, 341, 512, 609
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	299, 606
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	134, 216
BspT104I	TTCGAA	2 cut(s)	172, 196
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	252, 458, 579
BssMI	GATC	4 cut(s)	126, 145, 208, 760
Bst4CI	ACNGT	3 cut(s)	152, 220, 384
Bst6I	CTCTTC	3 cut(s)	534, 612, 717
BstBI	TTCGAA	2 cut(s)	172, 196
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	186, 369, 686
BstF5I	GGATG	3 cut(s)	40, 59, 521
BstFNI	CGCG	2 cut(s)	299, 606
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	129, 148, 211, 763
BstMAI	GTCTC	2 cut(s)	234, 450
BstMBI	GATC	4 cut(s)	126, 145, 208, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 422, 792
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	2 cut(s)	299, 606
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	2 cut(s)	393, 467
BstX2I	RGATCY	3 cut(s)	126, 208, 760
BstYI	RGATCY	3 cut(s)	126, 208, 760
BsuRI	GGCC	5 cut(s)	202, 272, 341, 512, 609
BtsCI	GGATG	3 cut(s)	40, 59, 521
BtsI	GCAGTG	2 cut(s)	657, 793
BtsIMutI	CAGTG	4 cut(s)	465, 572, 657, 793
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	510
CseI	GACGC	1 cut(s)	288
CviAII	CATG	2 cut(s)	155, 303
DdeI	CTNAG	3 cut(s)	186, 369, 686
DpnI	GATC	4 cut(s)	128, 147, 210, 762
DpnII	GATC	4 cut(s)	126, 145, 208, 760
EaeI	YGGCCR	2 cut(s)	270, 339
Eam1104I	CTCTTC	3 cut(s)	534, 612, 717
EarI	CTCTTC	3 cut(s)	534, 612, 717
Ecl136II	GAGCTC	1 cut(s)	670
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	670
EcoICRI	GAGCTC	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	672
FaeI	CATG	2 cut(s)	158, 306
FaiI	YATR	4 cut(s)	156, 206, 304, 663
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	2 cut(s)	154, 302
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	607, 729
FokI	GGATG	3 cut(s)	46, 47, 508
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	2 cut(s)	607, 729
FspBI	CTAG	2 cut(s)	396, 426
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	607, 729
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	5 cut(s)	202, 272, 341, 512, 609
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	158, 306
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HindIII	AAGCTT	3 cut(s)	110, 281, 414
HinfI	GANTC	9 cut(s)	11, 174, 182, 346, 463, 597, 675, 748, 806
HphI	GGTGA	2 cut(s)	53, 140
Hpy166II	GTNNAC	2 cut(s)	216, 572
Hpy188I	TCNGA	1 cut(s)	674
Hpy188III	TCNNGA	4 cut(s)	188, 389, 525, 745
Hpy8I	GTNNAC	2 cut(s)	216, 572
HpyAV	CCTTC	5 cut(s)	15, 192, 298, 538, 616
HpyCH4III	ACNGT	3 cut(s)	152, 220, 384
HpyCH4V	TGCA	5 cut(s)	133, 335, 572, 650, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 422, 792
HpyF3I	CTNAG	3 cut(s)	186, 369, 686
Hsp92II	CATG	2 cut(s)	158, 306
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	126, 145, 208, 760
LmnI	GCTCC	4 cut(s)	97, 136, 667, 675
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	3 cut(s)	69, 250, 804
MaeI	CTAG	2 cut(s)	396, 426
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	128, 147, 210, 762
MboI	GATC	4 cut(s)	126, 145, 208, 760
MboII	GAAGA	6 cut(s)	393, 467, 551, 629, 734, 755
MflI	RGATCY	3 cut(s)	126, 208, 760
MhlI	GDGCHC	2 cut(s)	574, 672
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	3 cut(s)	141, 377, 708
MluI	ACGCGT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	7 cut(s)	25, 184, 358, 500, 510, 708, 718
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	341
MvnI	CGCG	2 cut(s)	299, 606
MwoI	GCNNNNNNNGC	3 cut(s)	269, 422, 792
NdeII	GATC	4 cut(s)	126, 145, 208, 760
NlaIII	CATG	2 cut(s)	158, 306
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	41
NspV	TTCGAA	2 cut(s)	172, 196
PceI	AGGCCT	1 cut(s)	202
PfeI	GAWTC	8 cut(s)	11, 174, 182, 346, 597, 675, 748, 806
PkrI	GCNGC	2 cut(s)	608, 730
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	510
PsuI	RGATCY	3 cut(s)	126, 208, 760
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	672
SatI	GCNGC	2 cut(s)	607, 729
Sau3AI	GATC	4 cut(s)	126, 145, 208, 760
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	574, 672
SfaNI	GCATC	3 cut(s)	69, 250, 804
SfuI	TTCGAA	2 cut(s)	172, 196
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	141, 377, 708
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	123, 606
SspMI	CTAG	2 cut(s)	396, 426
SstI	GAGCTC	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	152, 220, 384
TaqI	TCGA	4 cut(s)	172, 196, 733, 744
TasI	AATT	3 cut(s)	141, 377, 708
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	8 cut(s)	11, 174, 182, 346, 597, 675, 748, 806
TscAI	CASTG	4 cut(s)	465, 579, 657, 793
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	4 cut(s)	465, 579, 657, 793
VneI	GTGCAC	1 cut(s)	570
XapI	RAATTY	1 cut(s)	708
XspI	CTAG	2 cut(s)	396, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.