Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001321.1

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Reverse (-)

6309 .. 7255

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001321.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgggttgcgattctaaaagaaggcgtagagaggatgtgggtgacacaacgatttcatcatccaagaagcaaaagctgatgccgatgacaggtttggagcagacccaaaagcttctttgttgcgggatcttgcaggagctaattgatcaccgtcatggctctgtggttgttcgaatccctgattctcaggaggttcgaaggcctatggatctgtccaccgtcaaatccaagttggagagagacaactactccagtattgatgcctttgtggccgatgtcaagcttaccttccaaaacgcgtcatggtattactctcttggagaaaaacagcgtgcaatggccaagaatcttggtaaggtttttgaggctaagtggaaattacggtttcctgaaactaggtctgtgtctgctattagtcctgtgagtccattaagtcttcaacaactcaacaacaacaacaacaacaacaaaagaggggccaagaggtcatccagaaaccttgacgaagagaagggttctgcttctgctatcacttgtgcagtgaataaatataaggagctccgaatcaaacggctaagggaacaggctcgtaaggaaattttgagggttgaagaggctgctcgattgaaagtcgagaaccctttacaagatcttcaacaactcaacttgttgtgcagtggtggcatcaaacaggattcttgttaccgggtgtatcgttggtacagaagtggaaatttgatgcccagaagacctacccaggtaagaaggccctttgtcaatacagcacaagttgtgtcactgtggtttcaccgtctcaataccttgtccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

277

Amino Acids

31.91

Weight (kDa)

10.12

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	134, 216
AcoI	YGGCCR	2 cut(s)	270, 339
AcsI	RAATTY	2 cut(s)	597, 733
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	440, 611, 628, 656
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	5 cut(s)	76, 112, 139, 283, 559
AluI	AGCT	5 cut(s)	76, 112, 139, 283, 559
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	234, 818
AlwI	GGATC	2 cut(s)	134, 216
AoxI	GGCC	5 cut(s)	200, 270, 339, 477, 767
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	2 cut(s)	597, 733
AspS9I	GGNCC	2 cut(s)	477, 768
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	53, 140, 800
AsuII	TTCGAA	2 cut(s)	172, 196
BaeI	ACNNNNGTAYC	2 cut(s)	712, 745
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	2 cut(s)	428, 754
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	234, 818
BfaI	CTAG	1 cut(s)	396
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
Bme1390I	CCNGG	2 cut(s)	707, 758
BmgT120I	GGNCC	2 cut(s)	477, 768
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	2 cut(s)	707, 758
BmsI	GCATC	4 cut(s)	69, 250, 693, 729
BpiI	GAAGAC	2 cut(s)	428, 754
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	575
Bpu14I	TTCGAA	2 cut(s)	172, 196
BpuMI	CCSGG	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	756
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	1 cut(s)	756
BseGI	GGATG	3 cut(s)	40, 59, 488
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	2 cut(s)	558, 694
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	5 cut(s)	202, 272, 341, 479, 769
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	706
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	234, 818
BsmBI	CGTCTC	1 cut(s)	818
BsnI	GGCC	5 cut(s)	202, 272, 341, 479, 769
Bsp119I	TTCGAA	2 cut(s)	172, 196
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	126, 145, 208, 649
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	5 cut(s)	202, 272, 341, 479, 769
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	478
BspPI	GGATC	2 cut(s)	134, 216
BspT104I	TTCGAA	2 cut(s)	172, 196
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	756
BssMI	GATC	4 cut(s)	126, 145, 208, 649
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	5 cut(s)	152, 220, 384, 801, 812
Bst6I	CTCTTC	2 cut(s)	501, 606
BstBI	TTCGAA	2 cut(s)	172, 196
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	186, 369, 575
BstF5I	GGATG	3 cut(s)	40, 59, 488
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	4 cut(s)	129, 148, 211, 652
BstMAI	GTCTC	2 cut(s)	234, 818
BstMBI	GATC	4 cut(s)	126, 145, 208, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 681
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	705, 756
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	2 cut(s)	428, 754
BstX2I	RGATCY	3 cut(s)	126, 208, 649
BstYI	RGATCY	3 cut(s)	126, 208, 649
BsuRI	GGCC	5 cut(s)	202, 272, 341, 479, 769
BtsCI	GGATG	3 cut(s)	40, 59, 488
BtsI	GCAGTG	2 cut(s)	546, 682
BtsIMutI	CAGTG	3 cut(s)	546, 682, 797
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	477, 768
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	2 cut(s)	155, 303
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	3 cut(s)	186, 369, 575
DpnI	GATC	4 cut(s)	128, 147, 210, 651
DpnII	GATC	4 cut(s)	126, 145, 208, 649
EaeI	YGGCCR	2 cut(s)	270, 339
Eam1104I	CTCTTC	2 cut(s)	501, 606
EarI	CTCTTC	2 cut(s)	501, 606
Ecl136II	GAGCTC	1 cut(s)	559
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	768
EcoRII	CCWGG	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	818
FaeI	CATG	2 cut(s)	158, 306
FaiI	YATR	4 cut(s)	156, 206, 304, 552
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	2 cut(s)	154, 302
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	3 cut(s)	46, 47, 475
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	5 cut(s)	202, 272, 341, 479, 769
HapII	CCGG	1 cut(s)	706
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	158, 306
HindIII	AAGCTT	2 cut(s)	110, 281
HinfI	GANTC	7 cut(s)	11, 174, 182, 346, 424, 564, 695
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	3 cut(s)	53, 140, 800
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	4 cut(s)	188, 389, 492, 634
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	5 cut(s)	15, 192, 298, 505, 759
HpyCH4III	ACNGT	5 cut(s)	152, 220, 384, 801, 812
HpyCH4V	TGCA	4 cut(s)	133, 335, 539, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 681
HpyF3I	CTNAG	3 cut(s)	186, 369, 575
Hsp92II	CATG	2 cut(s)	158, 306
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	126, 145, 208, 649
LmnI	GCTCC	4 cut(s)	97, 136, 556, 564
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	4 cut(s)	69, 250, 693, 729
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	41, 701, 795
MalI	GATC	4 cut(s)	128, 147, 210, 651
MboI	GATC	4 cut(s)	126, 145, 208, 649
MboII	GAAGA	5 cut(s)	428, 518, 623, 644, 759
MflI	RGATCY	3 cut(s)	126, 208, 649
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	141, 377, 597, 733
MluI	ACGCGT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	7 cut(s)	25, 184, 358, 467, 477, 597, 607
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	707, 758
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	269, 681
NciI	CCSGG	1 cut(s)	707
NdeII	GATC	4 cut(s)	126, 145, 208, 649
NlaIII	CATG	2 cut(s)	158, 306
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	2 cut(s)	41, 795
NspV	TTCGAA	2 cut(s)	172, 196
PceI	AGGCCT	1 cut(s)	202
PfeI	GAWTC	6 cut(s)	11, 174, 182, 346, 564, 695
PkrI	GCNGC	1 cut(s)	619
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	2 cut(s)	477, 768
PsuI	RGATCY	3 cut(s)	126, 208, 649
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	4 cut(s)	126, 145, 208, 649
Sau96I	GGNCC	2 cut(s)	477, 768
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	2 cut(s)	707, 758
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	4 cut(s)	69, 250, 693, 729
SfuI	TTCGAA	2 cut(s)	172, 196
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	4 cut(s)	141, 377, 597, 733
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	705, 756
TaaI	ACNGT	5 cut(s)	152, 220, 384, 801, 812
TaqI	TCGA	4 cut(s)	172, 196, 622, 633
TasI	AATT	4 cut(s)	141, 377, 597, 733
TfiI	GAWTC	6 cut(s)	11, 174, 182, 346, 564, 695
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	3 cut(s)	546, 682, 804
TseFI	GTSAC	2 cut(s)	41, 795
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	2 cut(s)	41, 795
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	546, 682, 804
XapI	RAATTY	2 cut(s)	597, 733
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.