Rorug02G0254200

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000736
Physical Location & Seq
Forward (+)
26659709 .. 26661241
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0254200.1

Sequence Viewer

Length: 750 bp
ATGTCGTTTGCTCTGAAATTGAATCTCTCAAACCCTAGAATCAAACCCAACTCCAACTTCGGAGGCCTCGCCGGTACCGCCCTTAATCCCCACCGTCTCCCCTACCATCTCAGACTCCCGGCACGGCGGCTCAACTCCGTTTCCGTACAGTCAGAGTACGTTAACGGAGCTTCAGAGCCGTCAATTTCATCGCATTACACAGAGAGCATCGGAGCCCCATCACCTTCGTCCCACCTTCTTCAGTGGAACCTCACCCAACGACACGTCGTCGTCCTCAATGTCGTTGCTTGCGCTGCGGCGGTTTCTGCAACGTGGCTCTTCTGCTCTGCAATTCCAACGCTTTTGGCTTTCAAGAGAGCAGCTGATTCACTTGCAAAGCTGATGGATGTTATGAGGGAAGAGCTACCGGATACAATGGCGGCTGTTCGCTTATCCGGGATGGAGATCAGTGACCTAACCATGGAGCTCAGTGATCTTGGCCAGGAGATTACACAAGGTGTTAGGAGTTCTACTCGAGCTGTTCGTGTGGCGGAGGACAGGTTGCGCCGCTTGACAAACATGGCTCCTACAGCATTCGTGCAGGAAGTAGCAAGTCCGAAAAATGAGGTGCCAGGGCCACCTTTGGCCACAACTGCAAGAAGCATACGAGAGGGAGTCGTGAAGGGTCGTGCTCTCTGGCAAATGTTTTTCACCATCACCCGGTTTTCTAGGTTGGCACTCAACTTTTTGATCAGACGGAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

249

Amino Acids

27.42

Weight (kDa)

10.5

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 74, 607
AciI CCGC 7 cut(s) 78, 127, 296, 299, 419, 530, 547
AcoI YGGCCR 2 cut(s) 478, 624
AcuI CTGAAG 2 cut(s) 156, 224
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 3 cut(s) 76, 147, 158
AfiI CCNNNNNNNGG 2 cut(s) 460, 699
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 2 cut(s) 22, 352
AhdI GACNNNNNGTC 1 cut(s) 266
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 480, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 6 cut(s) 170, 362, 379, 403, 466, 518
AluI AGCT 6 cut(s) 170, 362, 379, 403, 466, 518
Alw21I GWGCWC 2 cut(s) 468, 673
Alw26I GTCTC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 4 cut(s) 64, 478, 614, 624
ApeKI GCWGC 2 cut(s) 293, 359
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 293, 546
AspS9I GGNCC 1 cut(s) 614
AsuC2I CCSGG 3 cut(s) 119, 436, 700
AsuHPI GGTGA 4 cut(s) 213, 244, 682, 688
AvaI CYCGRG 1 cut(s) 513
BalI TGGCCA 2 cut(s) 480, 626
BanI GGYRCC 2 cut(s) 74, 607
BanII GRGCYC 2 cut(s) 217, 468
Bbv12I GWGCWC 2 cut(s) 468, 673
BbvI GCAGC 2 cut(s) 280, 371
BccI CCATC 5 cut(s) 114, 226, 376, 433, 701
BceAI ACGGC 2 cut(s) 140, 163
BciT130I CCWGG 2 cut(s) 482, 612
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 3 cut(s) 119, 436, 700
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 36, 708
BfmI CTRYAG 1 cut(s) 567
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 6 cut(s) 128, 294, 297, 360, 420, 547
BlsI GCNGC 6 cut(s) 129, 295, 298, 361, 421, 548
Bme1390I CCNGG 5 cut(s) 119, 436, 482, 612, 700
BmeRI GACNNNNNGTC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 5 cut(s) 76, 214, 248, 564, 609
BmrFI CCNGG 5 cut(s) 119, 436, 482, 612, 700
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpuMI CCSGG 3 cut(s) 119, 436, 700
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 459, 611
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 699
Bse118I RCCGGY 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 2 cut(s) 482, 612
BseDI CCNNGG 2 cut(s) 459, 611
BseGI GGATG 2 cut(s) 391, 444
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 460, 699
BseMII CTCAG 2 cut(s) 124, 481
BseXI GCAGC 2 cut(s) 280, 371
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 4 cut(s) 66, 480, 616, 626
BshNI GGYRCC 2 cut(s) 74, 607
BsiHKAI GWGCWC 2 cut(s) 468, 673
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 5 cut(s) 72, 119, 407, 435, 700
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 460, 699
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 4 cut(s) 66, 480, 616, 626
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 217, 468, 673
Bsp143I GATC 3 cut(s) 444, 472, 729
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 7 cut(s) 78, 127, 296, 299, 419, 530, 547
BspANI GGCC 4 cut(s) 66, 480, 616, 626
BspCNI CTCAG 2 cut(s) 123, 480
BspLI GGNNCC 5 cut(s) 76, 214, 248, 564, 609
BspQI GCTCTTC 2 cut(s) 323, 393
BspT107I GGYRCC 2 cut(s) 74, 607
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 459, 611
BssMI GATC 3 cut(s) 444, 472, 729
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 482, 612
Bst4CI ACNGT 2 cut(s) 95, 150
Bst6I CTCTTC 2 cut(s) 323, 393
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 110, 467
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 391, 444
BstHHI GCGC 2 cut(s) 293, 546
BstKTI GATC 3 cut(s) 447, 475, 732
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 444, 472, 729
BstMWI GCNNNNNNNGC 5 cut(s) 77, 293, 305, 569, 632
BstNI CCWGG 2 cut(s) 482, 612
BstSCI CCNGG 5 cut(s) 117, 434, 480, 610, 698
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 280, 371
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 4 cut(s) 66, 480, 616, 626
BtgI CCRYGG 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 391, 444
BtsIMutI CAGTG 3 cut(s) 248, 454, 475
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 293, 546
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 75, 146, 157
CviAII CATG 2 cut(s) 460, 559
CviQI GTAC 3 cut(s) 75, 146, 157
DdeI CTNAG 2 cut(s) 110, 467
DpnI GATC 3 cut(s) 446, 474, 731
DpnII GATC 3 cut(s) 444, 472, 729
DraIII CACNNNGTG 1 cut(s) 497
DriI GACNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 478, 624
Eam1104I CTCTTC 2 cut(s) 323, 393
Eam1105I GACNNNNNGTC 1 cut(s) 266
EarI CTCTTC 2 cut(s) 323, 393
EciI GGCGGA 1 cut(s) 545
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 217, 468
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 156, 224
Eco88I CYCGRG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 480, 610
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 2 cut(s) 217, 468
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 463, 562
FaiI YATR 4 cut(s) 392, 461, 560, 644
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 459, 558
FbaI TGATCA 1 cut(s) 729
Fnu4HI GCNGC 6 cut(s) 128, 294, 297, 360, 420, 547
FokI GGATG 2 cut(s) 398, 451
FriOI GRGCYC 2 cut(s) 217, 468
Fsp4HI GCNGC 6 cut(s) 128, 294, 297, 360, 420, 547
FspBI CTAG 2 cut(s) 36, 708
GlaI GCGC 2 cut(s) 292, 545
GluI GCNGC 6 cut(s) 128, 294, 297, 360, 420, 547
HaeIII GGCC 4 cut(s) 66, 480, 616, 626
HapII CCGG 5 cut(s) 72, 119, 407, 435, 700
HhaI GCGC 2 cut(s) 293, 546
Hin1II CATG 2 cut(s) 463, 562
Hin6I GCGC 2 cut(s) 291, 544
HinP1I GCGC 2 cut(s) 291, 544
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 5 cut(s) 22, 39, 114, 365, 654
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 5 cut(s) 72, 119, 407, 435, 700
HphI GGTGA 4 cut(s) 213, 244, 682, 688
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 8 cut(s) 15, 62, 113, 154, 175, 212, 597, 734
Hpy188III TCNNGA 2 cut(s) 352, 658
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 269, 272
HpyAV CCTTC 3 cut(s) 234, 245, 655
HpyCH4III ACNGT 2 cut(s) 95, 150
HpyCH4IV ACGT 3 cut(s) 159, 264, 311
HpyCH4V TGCA 5 cut(s) 308, 329, 374, 580, 635
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 293, 305, 569, 632
HpyF3I CTNAG 2 cut(s) 110, 467
HpySE526I ACGT 3 cut(s) 159, 264, 311
Hsp92II CATG 2 cut(s) 463, 562
HspAI GCGC 2 cut(s) 291, 544
KpnI GGTACC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 729
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 444, 472, 729
LguI GCTCTTC 2 cut(s) 323, 393
LmnI GCTCC 4 cut(s) 167, 212, 463, 568
Lsp1109I GCAGC 2 cut(s) 280, 371
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 36, 708
MaeII ACGT 3 cut(s) 159, 264, 311
MaeIII GTNAC 1 cut(s) 449
MalI GATC 3 cut(s) 446, 474, 731
MboI GATC 3 cut(s) 444, 472, 729
MboII GAAGA 3 cut(s) 230, 310, 410
MhlI GDGCHC 3 cut(s) 217, 468, 673
MlsI TGGCCA 2 cut(s) 480, 626
MluCI AATT 3 cut(s) 17, 183, 330
MluNI TGGCCA 2 cut(s) 480, 626
MlyI GAGTC 2 cut(s) 108, 663
MmeI TCCRAC 2 cut(s) 78, 359
MnlI CCTC 8 cut(s) 56, 77, 260, 284, 387, 526, 598, 643
Mox20I TGGCCA 2 cut(s) 480, 626
MscI TGGCCA 2 cut(s) 480, 626
MseI TTAA 2 cut(s) 84, 162
Msp20I TGGCCA 2 cut(s) 480, 626
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 5 cut(s) 72, 119, 407, 435, 700
MspR9I CCNGG 5 cut(s) 119, 436, 482, 612, 700
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 2 cut(s) 482, 612
MwoI GCNNNNNNNGC 5 cut(s) 77, 293, 305, 569, 632
NciI CCSGG 3 cut(s) 119, 436, 700
NcoI CCATGG 1 cut(s) 459
NdeII GATC 3 cut(s) 444, 472, 729
NlaIII CATG 2 cut(s) 463, 562
NlaIV GGNNCC 5 cut(s) 76, 214, 248, 564, 609
NmuCI GTSAC 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 513
PceI AGGCCT 1 cut(s) 66
PciSI GCTCTTC 2 cut(s) 323, 393
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 3 cut(s) 22, 39, 365
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 6 cut(s) 129, 295, 298, 361, 421, 548
PleI GAGTC 2 cut(s) 108, 662
PpsI GAGTC 2 cut(s) 108, 662
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 480, 610
PspGI CCWGG 2 cut(s) 480, 610
PspN4I GGNNCC 5 cut(s) 76, 214, 248, 564, 609
PspPI GGNCC 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 76, 147, 158
RsaNI GTAC 3 cut(s) 75, 146, 157
SacI GAGCTC 1 cut(s) 468
SapI GCTCTTC 2 cut(s) 323, 393
SaqAI TTAA 2 cut(s) 84, 162
SatI GCNGC 6 cut(s) 128, 294, 297, 360, 420, 547
Sau3AI GATC 3 cut(s) 444, 472, 729
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 2 cut(s) 108, 663
ScrFI CCNGG 5 cut(s) 119, 436, 482, 612, 700
SduI GDGCHC 3 cut(s) 217, 468, 673
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 513
SlaI CTCGAG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 3 cut(s) 17, 183, 330
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 7 cut(s) 78, 127, 296, 299, 419, 530, 547
SspMI CTAG 2 cut(s) 36, 708
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 5 cut(s) 117, 434, 480, 610, 698
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 95, 150
TaiI ACGT 3 cut(s) 162, 267, 314
TaqI TCGA 1 cut(s) 514
TasI AATT 3 cut(s) 17, 183, 330
TauI GCSGC 4 cut(s) 130, 299, 422, 549
TfiI GAWTC 3 cut(s) 22, 39, 365
Tru1I TTAA 2 cut(s) 84, 162
Tru9I TTAA 2 cut(s) 84, 162
TscAI CASTG 3 cut(s) 248, 454, 475
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 2 cut(s) 293, 359
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 3 cut(s) 127, 133, 180
TspRI CASTG 3 cut(s) 248, 454, 475
XhoI CTCGAG 1 cut(s) 513
XspI CTAG 2 cut(s) 36, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.