Rh2DG457700

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000736
Physical Location & Seq
Forward (+)
66143899 .. 66144831
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG457700.1

Sequence Viewer

Length: 933 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGGGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAAGCTTACCTTCCAAAACGCGTTATGGTATTACTCTCTTGGAGAAAAACAGCATGCAATGGCCAAGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTGCTACTTTGGATAGGTCTGTGTCTCTTATTAGTCCATTAAGTCTTCAACAACTCAACAACAACAACAACAAAAGAGGGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTACTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACCAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAACTTGTTGTGCACTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGACAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAACATGTTTATGAAGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGGTGAAATCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

310

Amino Acids

35.61

Weight (kDa)

9.2

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 115 1.8e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 600
AciI CCGC 3 cut(s) 123, 600, 928
AclWI GGATC 2 cut(s) 134, 216
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 2 cut(s) 702, 893
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 89, 616
AflIII ACRYGT 2 cut(s) 297, 874
AgsI TTSAA 8 cut(s) 405, 412, 470, 716, 733, 761, 856, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 6 cut(s) 76, 112, 139, 283, 416, 664
AluI AGCT 6 cut(s) 76, 112, 139, 283, 416, 664
Alw21I GWGCWC 2 cut(s) 666, 782
Alw26I GTCTC 2 cut(s) 234, 450
Alw44I GTGCAC 1 cut(s) 778
AlwI GGATC 2 cut(s) 134, 216
AoxI GGCC 5 cut(s) 200, 270, 339, 501, 601
ApaLI GTGCAC 1 cut(s) 778
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 702, 893
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 53, 140, 932
AsuII TTCGAA 2 cut(s) 172, 196
BaeGI GKGCMC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 666
BbsI GAAGAC 2 cut(s) 393, 458
Bbv12I GWGCWC 2 cut(s) 666, 782
BbvI GCAGC 1 cut(s) 709
BceAI ACGGC 1 cut(s) 692
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 450
BfaI CTAG 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 754
BisI GCNGC 2 cut(s) 601, 723
BlsI GCNGC 2 cut(s) 602, 724
BmcAI AGTACT 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 502
BmsI GCATC 4 cut(s) 69, 250, 798, 855
BpiI GAAGAC 2 cut(s) 393, 458
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 2 cut(s) 172, 196
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 616
Bse1I ACTGG 3 cut(s) 252, 573, 787
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 5 cut(s) 40, 59, 512, 868, 895
BseLI CCNNNNNNNGG 2 cut(s) 89, 616
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 252, 573, 787
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 1 cut(s) 709
BsgI GTGCAG 2 cut(s) 582, 663
Bsh1236I CGCG 2 cut(s) 299, 600
BshFI GGCC 5 cut(s) 202, 272, 341, 503, 603
BsiHKAI GWGCWC 2 cut(s) 666, 782
BslI CCNNNNNNNGG 2 cut(s) 89, 616
BsmAI GTCTC 2 cut(s) 234, 450
BsnI GGCC 5 cut(s) 202, 272, 341, 503, 603
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 2 cut(s) 666, 782
Bsp143I GATC 4 cut(s) 126, 145, 208, 754
BspACI CCGC 3 cut(s) 123, 600, 928
BspANI GGCC 5 cut(s) 202, 272, 341, 503, 603
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 600
BspLI GGNNCC 1 cut(s) 502
BspPI GGATC 2 cut(s) 134, 216
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 3 cut(s) 252, 573, 787
BssMI GATC 4 cut(s) 126, 145, 208, 754
Bst4CI ACNGT 3 cut(s) 152, 220, 384
Bst6I CTCTTC 4 cut(s) 525, 711, 851, 879
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 186, 369, 680
BstF5I GGATG 5 cut(s) 40, 59, 512, 868, 895
BstFNI CGCG 2 cut(s) 299, 600
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 4 cut(s) 129, 148, 211, 757
BstMAI GTCTC 2 cut(s) 234, 450
BstMBI GATC 4 cut(s) 126, 145, 208, 754
BstMWI GCNNNNNNNGC 3 cut(s) 269, 422, 786
BstNSI RCATGY 2 cut(s) 335, 878
BstSLI GKGCMC 1 cut(s) 782
BstUI CGCG 2 cut(s) 299, 600
BstV1I GCAGC 1 cut(s) 709
BstV2I GAAGAC 2 cut(s) 393, 458
BstX2I RGATCY 3 cut(s) 126, 208, 754
BstYI RGATCY 3 cut(s) 126, 208, 754
BsuRI GGCC 5 cut(s) 202, 272, 341, 503, 603
BtsCI GGATG 5 cut(s) 40, 59, 512, 868, 895
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 651, 780
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 566
CviAII CATG 3 cut(s) 155, 332, 875
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 3 cut(s) 186, 369, 680
DpnI GATC 4 cut(s) 128, 147, 210, 756
DpnII GATC 4 cut(s) 126, 145, 208, 754
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 4 cut(s) 525, 711, 851, 879
EarI CTCTTC 4 cut(s) 525, 711, 851, 879
Ecl136II GAGCTC 1 cut(s) 664
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 666
Eco53kI GAGCTC 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 664
EcoT38I GRGCYC 1 cut(s) 666
FaeI CATG 3 cut(s) 158, 335, 878
FaiI YATR 7 cut(s) 156, 206, 304, 333, 657, 876, 882
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 154, 331, 874
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 601, 723
FokI GGATG 5 cut(s) 46, 47, 499, 875, 902
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 2 cut(s) 601, 723
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 599
GluI GCNGC 2 cut(s) 601, 723
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 503, 603
HhaI GCGC 1 cut(s) 600
Hin1II CATG 3 cut(s) 158, 335, 878
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 3 cut(s) 110, 281, 414
HinfI GANTC 8 cut(s) 11, 174, 182, 346, 591, 669, 742, 800
HphI GGTGA 3 cut(s) 53, 140, 932
Hpy166II GTNNAC 3 cut(s) 216, 780, 828
Hpy188I TCNGA 1 cut(s) 668
Hpy188III TCNNGA 4 cut(s) 188, 389, 516, 739
Hpy8I GTNNAC 3 cut(s) 216, 780, 828
HpyAV CCTTC 6 cut(s) 15, 192, 298, 529, 610, 911
HpyCH4III ACNGT 3 cut(s) 152, 220, 384
HpyCH4V TGCA 5 cut(s) 133, 335, 563, 644, 780
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 422, 786
HpyF3I CTNAG 3 cut(s) 186, 369, 680
Hsp92II CATG 3 cut(s) 158, 335, 878
HspAI GCGC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 126, 145, 208, 754
LmnI GCTCC 4 cut(s) 97, 136, 661, 669
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 4 cut(s) 69, 250, 798, 855
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 41, 806
MalI GATC 4 cut(s) 128, 147, 210, 756
MboI GATC 4 cut(s) 126, 145, 208, 754
MboII GAAGA 8 cut(s) 393, 458, 542, 728, 749, 868, 896, 926
MflI RGATCY 3 cut(s) 126, 208, 754
MhlI GDGCHC 2 cut(s) 666, 782
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 4 cut(s) 141, 377, 702, 893
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 25, 184, 358, 491, 501, 702, 712, 852, 880
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 2 cut(s) 153, 879
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 930
MvnI CGCG 2 cut(s) 299, 600
MwoI GCNNNNNNNGC 3 cut(s) 269, 422, 786
NdeII GATC 4 cut(s) 126, 145, 208, 754
NlaIII CATG 3 cut(s) 158, 335, 878
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 2 cut(s) 335, 878
NspV TTCGAA 2 cut(s) 172, 196
PaeI GCATGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 874
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 591, 669, 742, 800
PkrI GCNGC 2 cut(s) 602, 724
PscI ACATGT 1 cut(s) 874
Psp124BI GAGCTC 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 501
PsuI RGATCY 3 cut(s) 126, 208, 754
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 2 cut(s) 153, 879
SacI GAGCTC 1 cut(s) 666
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 2 cut(s) 601, 723
Sau3AI GATC 4 cut(s) 126, 145, 208, 754
Sau96I GGNCC 1 cut(s) 501
ScaI AGTACT 1 cut(s) 567
SduI GDGCHC 2 cut(s) 666, 782
SfaNI GCATC 4 cut(s) 69, 250, 798, 855
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 2 cut(s) 153, 879
SphI GCATGC 1 cut(s) 335
Sse9I AATT 4 cut(s) 141, 377, 702, 893
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 123, 600, 928
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 666
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 3 cut(s) 152, 220, 384
TaqI TCGA 4 cut(s) 172, 196, 727, 738
TasI AATT 4 cut(s) 141, 377, 702, 893
TatI WGTACW 1 cut(s) 565
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 591, 669, 742, 800
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 2 cut(s) 651, 787
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 45, 879, 897, 906
TspRI CASTG 2 cut(s) 651, 787
VneI GTGCAC 1 cut(s) 778
XapI RAATTY 2 cut(s) 702, 893
XceI RCATGY 2 cut(s) 335, 878
XspI CTAG 1 cut(s) 396
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.