Rh1BG044300

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000736
Physical Location & Seq
Reverse (-)
5886590 .. 5887716
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG044300.1

Sequence Viewer

Length: 990 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGGTGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGCATCTTGCAGGAGCTAATTGATCACCGTCTTGGCTGTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAGGCTTACCTTCCAAAACGCGTCATGGTATTACCCTCTTGGAGATAAACAGCGTGCAATGGCCAGGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTAGGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTGCTAGTTTGGATAGGTTTGTGTCTCCTATTAGTCCAGTGAGTCCATTAAGTCTTAAACAACTCAACAACAACAACAACAACAAAAGAGAGGCCAAGAGGTCATCCAGAAACCTTGACGAAAAGAAGGGTTCTGCTTCTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGGGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAGCGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGCTTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAAGTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTTTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAAGATGTTGATGAGGATCAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACTAAATATTACATCCACATATGGTGGCATATCATCATCATCATCCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

329

Amino Acids

37.9

Weight (kDa)

9.3

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 112 8.3e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 597
AciI CCGC 3 cut(s) 123, 597, 673
AclWI GGATC 2 cut(s) 216, 891
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 1 cut(s) 699
AfiI CCNNNNNNNGG 2 cut(s) 89, 279
AflIII ACRYGT 2 cut(s) 297, 984
AgsI TTSAA 7 cut(s) 405, 412, 713, 730, 758, 853, 869
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 5 cut(s) 76, 112, 139, 416, 661
AluI AGCT 5 cut(s) 76, 112, 139, 416, 661
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 2 cut(s) 234, 450
AlwI GGATC 2 cut(s) 216, 891
AoxI GGCC 5 cut(s) 200, 270, 339, 513, 598
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 1 cut(s) 699
AspLEI GCGC 1 cut(s) 597
AsuHPI GGTGA 3 cut(s) 53, 97, 140
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 663
BbvI GCAGC 1 cut(s) 706
BccI CCATC 1 cut(s) 908
BciT130I CCWGG 1 cut(s) 343
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 450
BfaI CTAG 2 cut(s) 396, 426
BfmI CTRYAG 1 cut(s) 561
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 751
BisI GCNGC 4 cut(s) 124, 598, 674, 720
BlsI GCNGC 4 cut(s) 125, 599, 675, 721
Bme1390I CCNGG 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 5 cut(s) 69, 135, 250, 795, 852
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 677
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 2 cut(s) 749, 851
BsaBI GATNNNNATC 1 cut(s) 882
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 279
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 252, 458
Bse3DI GCAATG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 1 cut(s) 343
BseGI GGATG 6 cut(s) 40, 59, 524, 865, 948, 978
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 2 cut(s) 89, 279
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 252, 458
BseXI GCAGC 1 cut(s) 706
BsgI GTGCAG 2 cut(s) 660, 796
Bsh1236I CGCG 2 cut(s) 299, 597
BshFI GGCC 5 cut(s) 202, 272, 341, 515, 600
BsiHKAI GWGCWC 1 cut(s) 663
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 89, 279
BsmAI GTCTC 2 cut(s) 234, 450
BsnI GGCC 5 cut(s) 202, 272, 341, 515, 600
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 4 cut(s) 145, 208, 751, 883
BspACI CCGC 3 cut(s) 123, 597, 673
BspANI GGCC 5 cut(s) 202, 272, 341, 515, 600
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 597
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 2 cut(s) 216, 891
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 2 cut(s) 252, 458
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 4 cut(s) 145, 208, 751, 883
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 152, 220
Bst6I CTCTTC 2 cut(s) 708, 848
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 2 cut(s) 333, 724
BstDEI CTNAG 3 cut(s) 186, 369, 677
BstF5I GGATG 6 cut(s) 40, 59, 524, 865, 948, 978
BstFNI CGCG 2 cut(s) 299, 597
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 4 cut(s) 148, 211, 754, 886
BstMAI GTCTC 2 cut(s) 234, 450
BstMBI GATC 4 cut(s) 145, 208, 751, 883
BstMWI GCNNNNNNNGC 3 cut(s) 269, 422, 783
BstNI CCWGG 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 988
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 2 cut(s) 299, 597
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 208, 751
BstYI RGATCY 2 cut(s) 208, 751
BsuRI GGCC 5 cut(s) 202, 272, 341, 515, 600
BtsCI GGATG 6 cut(s) 40, 59, 524, 865, 948, 978
BtsI GCAGTG 3 cut(s) 570, 648, 784
BtsIMutI CAGTG 4 cut(s) 465, 570, 648, 784
Cac8I GCNNGC 2 cut(s) 333, 724
CfoI GCGC 1 cut(s) 597
Cfr10I RCCGGY 1 cut(s) 82
CseI GACGC 1 cut(s) 288
CviAII CATG 2 cut(s) 303, 985
DdeI CTNAG 3 cut(s) 186, 369, 677
DpnI GATC 4 cut(s) 147, 210, 753, 885
DpnII GATC 4 cut(s) 145, 208, 751, 883
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 2 cut(s) 708, 848
EarI CTCTTC 2 cut(s) 708, 848
Ecl136II GAGCTC 1 cut(s) 661
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 663
FaeI CATG 2 cut(s) 306, 988
FaiI YATR 7 cut(s) 206, 304, 654, 956, 958, 966, 986
FatI CATG 2 cut(s) 302, 984
FauNDI CATATG 1 cut(s) 956
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 124, 598, 674, 720
FokI GGATG 6 cut(s) 46, 47, 511, 872, 935, 965
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 4 cut(s) 124, 598, 674, 720
FspBI CTAG 2 cut(s) 396, 426
GlaI GCGC 1 cut(s) 596
GluI GCNGC 4 cut(s) 124, 598, 674, 720
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 515, 600
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 597
Hin1II CATG 2 cut(s) 306, 988
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 1 cut(s) 825
HindII GTYRAC 1 cut(s) 825
HindIII AAGCTT 2 cut(s) 110, 414
HpaII CCGG 1 cut(s) 83
HphI GGTGA 3 cut(s) 53, 97, 140
Hpy166II GTNNAC 3 cut(s) 216, 825, 929
Hpy188I TCNGA 1 cut(s) 665
Hpy188III TCNNGA 4 cut(s) 188, 389, 528, 736
Hpy8I GTNNAC 3 cut(s) 216, 825, 929
HpyAV CCTTC 6 cut(s) 15, 192, 298, 541, 602, 607
HpyCH4III ACNGT 2 cut(s) 152, 220
HpyCH4V TGCA 5 cut(s) 133, 335, 563, 641, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 422, 783
HpyF3I CTNAG 3 cut(s) 186, 369, 677
Hsp92II CATG 2 cut(s) 306, 988
HspAI GCGC 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 145, 208, 751, 883
LmnI GCTCC 4 cut(s) 97, 136, 658, 666
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 5 cut(s) 69, 135, 250, 795, 852
MaeI CTAG 2 cut(s) 396, 426
MaeIII GTNAC 3 cut(s) 41, 85, 803
MalI GATC 4 cut(s) 147, 210, 753, 885
MboI GATC 4 cut(s) 145, 208, 751, 883
MboII GAAGA 7 cut(s) 393, 725, 746, 865, 881, 920, 923
MflI RGATCY 2 cut(s) 208, 751
MhlI GDGCHC 1 cut(s) 663
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 4 cut(s) 141, 377, 699, 887
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 472, 934
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 2 cut(s) 470, 477
MslI CAYNNNNRTG 1 cut(s) 983
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 2 cut(s) 299, 597
MwoI GCNNNNNNNGC 3 cut(s) 269, 422, 783
NdeI CATATG 1 cut(s) 956
NdeII GATC 4 cut(s) 145, 208, 751, 883
NlaIII CATG 2 cut(s) 306, 988
NmuCI GTSAC 2 cut(s) 41, 85
NspI RCATGY 1 cut(s) 988
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 984
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 588, 666, 739, 797
PkrI GCNGC 4 cut(s) 125, 599, 675, 721
PleI GAGTC 2 cut(s) 471, 933
PpsI GAGTC 2 cut(s) 471, 933
PscI ACATGT 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 2 cut(s) 208, 751
RseI CAYNNNNRTG 1 cut(s) 983
SacI GAGCTC 1 cut(s) 663
SaqAI TTAA 2 cut(s) 470, 477
SatI GCNGC 4 cut(s) 124, 598, 674, 720
Sau3AI GATC 4 cut(s) 145, 208, 751, 883
SchI GAGTC 2 cut(s) 472, 934
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 5 cut(s) 69, 135, 250, 795, 852
SfcI CTRYAG 1 cut(s) 561
SfuI TTCGAA 2 cut(s) 172, 196
SmiMI CAYNNNNRTG 1 cut(s) 983
SmlI CTYRAG 2 cut(s) 764, 830
SmoI CTYRAG 2 cut(s) 764, 830
Sse9I AATT 4 cut(s) 141, 377, 699, 887
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 123, 597, 673
SspI AATATT 1 cut(s) 944
SspMI CTAG 2 cut(s) 396, 426
SstI GAGCTC 1 cut(s) 663
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 152, 220
TaqI TCGA 3 cut(s) 172, 196, 735
TasI AATT 4 cut(s) 141, 377, 699, 887
TauI GCSGC 3 cut(s) 126, 600, 676
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 588, 666, 739, 797
Tru1I TTAA 2 cut(s) 470, 477
Tru9I TTAA 2 cut(s) 470, 477
TscAI CASTG 4 cut(s) 465, 570, 648, 784
TseFI GTSAC 2 cut(s) 41, 85
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 2 cut(s) 41, 85
TspDTI ATGAA 2 cut(s) 45, 876
TspRI CASTG 4 cut(s) 465, 570, 648, 784
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 988
XspI CTAG 2 cut(s) 396, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.