Rh1BG049800

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000736
Physical Location & Seq
Forward (+)
6863279 .. 6866364
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG049800.1

Sequence Viewer

Length: 1053 bp
ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGGTGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGCATCTTGCAGGAGCTAATTGATCACCGTCTTGGCTGTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAGGCTTACCTTCCAAAACGCGTCATGGTATTACCCTCTTGGAGATAAACAGCGTGCAATGGCCAGGAATCTTGGTAAGGTTTTTGAGGCTAAGTGGAAATTAGGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTGCTAGTTTGGATAGGTTTGTGTCTCCTATTAGTCCAGTGAGTCCATTAAGTCTTAAACAACTCAACAACAACAACAACAAAAGAGAGGCCAAGAGGTCATCCAGAAACCTTGACGAAAAGAAGGGTTCTGCTTCTGCTATCACTTCTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGGGAAGGGTTCTGCTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCTCCGAATCAAGCGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGCTTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAAGTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTTTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGATGAACTTGAAGATGTTGATGAGGATCAATTTCGCATTGGAGATTGGGAAGAAGATGGAGAACAGAGTCCACAAACAACTAAATATTACATCCACATATGGTGGCATCTCATCATCATCATCAAGTACATACTGCTACGTAGCAAAATTTATTCTATGTACAAAAATTCATGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

350

Amino Acids

40.24

Weight (kDa)

9.41

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 63 - 112 9.2e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 606
AciI CCGC 3 cut(s) 123, 606, 688
AclWI GGATC 2 cut(s) 216, 906
AcoI YGGCCR 2 cut(s) 270, 339
AcsI RAATTY 3 cut(s) 714, 1020, 1039
AfaI GTAC 3 cut(s) 1001, 1034, 1048
AfiI CCNNNNNNNGG 2 cut(s) 89, 279
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 7 cut(s) 405, 412, 728, 745, 773, 868, 884
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 5 cut(s) 76, 112, 139, 416, 676
AluI AGCT 5 cut(s) 76, 112, 139, 416, 676
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 2 cut(s) 234, 450
AlwI GGATC 2 cut(s) 216, 906
AoxI GGCC 5 cut(s) 200, 270, 339, 510, 607
ApeKI GCWGC 1 cut(s) 734
ApoI RAATTY 3 cut(s) 714, 1020, 1039
AspLEI GCGC 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 53, 97, 140
AsuII TTCGAA 2 cut(s) 172, 196
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 721
BccI CCATC 1 cut(s) 923
BciT130I CCWGG 1 cut(s) 343
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 234, 450
BfaI CTAG 2 cut(s) 396, 426
BfmI CTRYAG 1 cut(s) 570
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 766
BisI GCNGC 4 cut(s) 124, 607, 689, 735
BlsI GCNGC 4 cut(s) 125, 608, 690, 736
Bme1390I CCNGG 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 6 cut(s) 69, 135, 250, 810, 867, 988
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 2 cut(s) 172, 196
BpuEI CTTGAG 2 cut(s) 764, 866
BsaAI YACGTR 1 cut(s) 1013
BsaBI GATNNNNATC 1 cut(s) 897
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 279
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 252, 458
Bse3DI GCAATG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 1 cut(s) 343
BseGI GGATG 5 cut(s) 40, 59, 521, 880, 963
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 2 cut(s) 89, 279
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 252, 458
BseXI GCAGC 1 cut(s) 721
BsgI GTGCAG 2 cut(s) 675, 811
Bsh1236I CGCG 2 cut(s) 299, 606
BshFI GGCC 5 cut(s) 202, 272, 341, 512, 609
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 89, 279
BsmAI GTCTC 2 cut(s) 234, 450
BsnI GGCC 5 cut(s) 202, 272, 341, 512, 609
Bsp119I TTCGAA 2 cut(s) 172, 196
Bsp1286I GDGCHC 1 cut(s) 678
Bsp1407I TGTACA 2 cut(s) 1032, 1046
Bsp143I GATC 4 cut(s) 145, 208, 766, 898
BspACI CCGC 3 cut(s) 123, 606, 688
BspANI GGCC 5 cut(s) 202, 272, 341, 512, 609
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 299, 606
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 2 cut(s) 216, 906
BspT104I TTCGAA 2 cut(s) 172, 196
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 82
BsrGI TGTACA 2 cut(s) 1032, 1046
BsrI ACTGG 2 cut(s) 252, 458
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 4 cut(s) 145, 208, 766, 898
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 152, 220
Bst6I CTCTTC 2 cut(s) 723, 863
BstAUI TGTACA 2 cut(s) 1032, 1046
BstBAI YACGTR 1 cut(s) 1013
BstBI TTCGAA 2 cut(s) 172, 196
BstC8I GCNNGC 2 cut(s) 333, 739
BstDEI CTNAG 3 cut(s) 186, 369, 692
BstF5I GGATG 5 cut(s) 40, 59, 521, 880, 963
BstFNI CGCG 2 cut(s) 299, 606
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 4 cut(s) 148, 211, 769, 901
BstMAI GTCTC 2 cut(s) 234, 450
BstMBI GATC 4 cut(s) 145, 208, 766, 898
BstMWI GCNNNNNNNGC 3 cut(s) 269, 422, 798
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 570
BstSNI TACGTA 1 cut(s) 1013
BstUI CGCG 2 cut(s) 299, 606
BstV1I GCAGC 1 cut(s) 721
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 208, 766
BstYI RGATCY 2 cut(s) 208, 766
BsuRI GGCC 5 cut(s) 202, 272, 341, 512, 609
BtsCI GGATG 5 cut(s) 40, 59, 521, 880, 963
BtsI GCAGTG 3 cut(s) 579, 663, 799
BtsIMutI CAGTG 4 cut(s) 465, 579, 663, 799
Cac8I GCNNGC 2 cut(s) 333, 739
CfoI GCGC 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 82
CseI GACGC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 1000, 1033, 1047
CviAII CATG 2 cut(s) 303, 1044
CviQI GTAC 3 cut(s) 1000, 1033, 1047
DdeI CTNAG 3 cut(s) 186, 369, 692
DpnI GATC 4 cut(s) 147, 210, 768, 900
DpnII GATC 4 cut(s) 145, 208, 766, 898
EaeI YGGCCR 2 cut(s) 270, 339
Eam1104I CTCTTC 2 cut(s) 723, 863
EarI CTCTTC 2 cut(s) 723, 863
Ecl136II GAGCTC 1 cut(s) 676
Eco105I TACGTA 1 cut(s) 1013
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 678
FaeI CATG 2 cut(s) 306, 1047
FaiI YATR 9 cut(s) 206, 304, 669, 971, 973, 1004, 1031, 1045, 1051
FatI CATG 2 cut(s) 302, 1043
FauNDI CATATG 1 cut(s) 971
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 124, 607, 689, 735
FokI GGATG 5 cut(s) 46, 47, 508, 887, 950
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 4 cut(s) 124, 607, 689, 735
FspBI CTAG 2 cut(s) 396, 426
GlaI GCGC 1 cut(s) 605
GluI GCNGC 4 cut(s) 124, 607, 689, 735
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 202, 272, 341, 512, 609
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 606
Hin1II CATG 2 cut(s) 306, 1047
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 2 cut(s) 110, 414
HpaII CCGG 1 cut(s) 83
HphI GGTGA 3 cut(s) 53, 97, 140
Hpy166II GTNNAC 3 cut(s) 216, 840, 944
Hpy188I TCNGA 1 cut(s) 680
Hpy188III TCNNGA 4 cut(s) 188, 389, 525, 751
Hpy8I GTNNAC 3 cut(s) 216, 840, 944
HpyAV CCTTC 6 cut(s) 15, 192, 298, 538, 611, 616
HpyCH4III ACNGT 2 cut(s) 152, 220
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 5 cut(s) 133, 335, 572, 656, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 422, 798
HpyF3I CTNAG 3 cut(s) 186, 369, 692
HpySE526I ACGT 1 cut(s) 1012
Hsp92II CATG 2 cut(s) 306, 1047
HspAI GCGC 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 145, 208, 766, 898
LmnI GCTCC 4 cut(s) 97, 136, 673, 681
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 6 cut(s) 69, 135, 250, 810, 867, 988
MaeI CTAG 2 cut(s) 396, 426
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 3 cut(s) 41, 85, 818
MalI GATC 4 cut(s) 147, 210, 768, 900
MboI GATC 4 cut(s) 145, 208, 766, 898
MboII GAAGA 7 cut(s) 393, 740, 761, 880, 896, 935, 938
MflI RGATCY 2 cut(s) 208, 766
MhlI GDGCHC 1 cut(s) 678
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 6 cut(s) 141, 377, 714, 902, 1020, 1039
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 472, 949
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
MseI TTAA 2 cut(s) 470, 477
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 2 cut(s) 299, 606
MwoI GCNNNNNNNGC 3 cut(s) 269, 422, 798
NdeI CATATG 1 cut(s) 971
NdeII GATC 4 cut(s) 145, 208, 766, 898
NlaIII CATG 2 cut(s) 306, 1047
NmuCI GTSAC 2 cut(s) 41, 85
NspV TTCGAA 2 cut(s) 172, 196
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 8 cut(s) 11, 174, 182, 346, 597, 681, 754, 812
PkrI GCNGC 4 cut(s) 125, 608, 690, 736
PleI GAGTC 2 cut(s) 471, 948
PpsI GAGTC 2 cut(s) 471, 948
Ppu21I YACGTR 1 cut(s) 1013
Psp124BI GAGCTC 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 208, 766
RsaI GTAC 3 cut(s) 1001, 1034, 1048
RsaNI GTAC 3 cut(s) 1000, 1033, 1047
SacI GAGCTC 1 cut(s) 678
SaqAI TTAA 2 cut(s) 470, 477
SatI GCNGC 4 cut(s) 124, 607, 689, 735
Sau3AI GATC 4 cut(s) 145, 208, 766, 898
SchI GAGTC 2 cut(s) 472, 949
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 678
SfaNI GCATC 6 cut(s) 69, 135, 250, 810, 867, 988
SfcI CTRYAG 1 cut(s) 570
SfuI TTCGAA 2 cut(s) 172, 196
SmlI CTYRAG 2 cut(s) 779, 845
SmoI CTYRAG 2 cut(s) 779, 845
SnaBI TACGTA 1 cut(s) 1013
Sse9I AATT 6 cut(s) 141, 377, 714, 902, 1020, 1039
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 123, 606, 688
SspI AATATT 1 cut(s) 959
SspMI CTAG 2 cut(s) 396, 426
SstI GAGCTC 1 cut(s) 678
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 152, 220
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 3 cut(s) 172, 196, 750
TasI AATT 6 cut(s) 141, 377, 714, 902, 1020, 1039
TatI WGTACW 3 cut(s) 999, 1032, 1046
TauI GCSGC 3 cut(s) 126, 609, 691
TfiI GAWTC 8 cut(s) 11, 174, 182, 346, 597, 681, 754, 812
Tru1I TTAA 2 cut(s) 470, 477
Tru9I TTAA 2 cut(s) 470, 477
TscAI CASTG 4 cut(s) 465, 579, 663, 799
TseFI GTSAC 2 cut(s) 41, 85
TseI GCWGC 1 cut(s) 734
Tsp45I GTSAC 2 cut(s) 41, 85
TspDTI ATGAA 3 cut(s) 45, 891, 1032
TspRI CASTG 4 cut(s) 465, 579, 663, 799
XapI RAATTY 3 cut(s) 714, 1020, 1039
XspI CTAG 2 cut(s) 396, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.