Prupe.4G212600_v2.0.a1

acetylation-dependent protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000736
Physical Location & Seq
Forward (+)
13264631 .. 13266443
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G212600.1

Sequence Viewer

Length: 1149 bp
ATGGCGTTGTCTACTCGAAATCGAAAGCGTAAACAATTGGGGGATGGCGTTGCTCCGTTTGAGTTTCCATTTCAGACCCAGAAGATCAAGAGGGTTTCTAGGGTTTTTAAGACCCAACAGAATTTAGCCGTGGAGAAAAAGCCGACTACTTCTCTTCCTCTGCGCAAGGGTTTGTCGCCCAAACAGATAAAGACCATCCCTTTGGCTTCATCTCCTAGAAAGCATAGAAAATCGGAGGAGTTAGGTTTTGATGGTCTCTGTCAGACTCAGAAGATCAAGAGGCAAAAACTAGGTTTTGAGTTTGATTGTTCTGAAATTTTGGGGTCTCTGATGAACCTCCGCCATGTGAGTGGGTACTTTGAGAAGCCTGTGGTTGATCCGGTTTATTTCCACGACATCTGGAGGCCGATGGATTTCGGTACTGTGAAATCCAAATTGGAGAGGGGTGTCTACTCCAGTCCTGATGGGTTTGCTGCTGATGTGAGGCTTACCTTGTCAAATGCTTTAAGATATTATCCGCCTGGGAGGATTGAGCGTGCAGCAGCCAAGCATCTCAGTGGTGTTTTTGAGAGCAAGTGGAAGGAAGCCCTGGAGAAAAACCCCAAGTCTGTTTGTCCTTCTCCTCTGCCCAAAGTCAAGGGTTTGGCAGTGTTACCCAAACTGAAACAGGGCAAGACCTCTTCTCCTTCTAGCGTTCTTCAAAGTCAAGGGCTTGGTGTTTCTGATTCTCAGTCAGTTGATTCAACCAAACACGATGAGTTGGCCACCCTTGTTGATAATGCCATGGATCAGGCCTCAGAGAATCTTTCCCAATGTAAGGCTGTCCGAATTCATGCACTAAAGCTACGATTTTCAGGTACTATATTGAAAGCAAACAAGATACTTAACGGTGTACCTGATTCTCCACCAAGGAGAAAATCGATGCAGCGGATGAAGCAAAGGGAGTTGGCTTGTCGTGCCATTTCGAACATGAAGAAGTCAGTGCAATTTGATGAACCTTTACAGGATCTCAAACAACTTGAGATGCTGTGTGGCTGTGGCAGTGAAGATCCTTTTCTACAGGTCCGCTTTGGATTGCCGCTTAAGAAATTGGGTGTATTCCTTAGGAAGATGATGAGTTGCAAGGTCAGGATGAGGAGGCCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET Bromodomain

Protein Analysis

383

Amino Acids

43.0

Weight (kDa)

10.1

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 164
AccI GTMKAC 2 cut(s) 11, 450
AciI CCGC 5 cut(s) 340, 518, 928, 1066, 1079
AclWI GGATC 4 cut(s) 371, 795, 1014, 1043
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 3 cut(s) 121, 315, 828
AfaI GTAC 4 cut(s) 356, 421, 859, 894
AfiI CCNNNNNNNGG 1 cut(s) 817
AflII CTTAAG 1 cut(s) 1082
AgsI TTSAA 3 cut(s) 701, 744, 868
AjnI CCWGG 2 cut(s) 520, 588
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 1 cut(s) 844
AluI AGCT 1 cut(s) 844
Alw26I GTCTC 2 cut(s) 260, 330
AlwI GGATC 4 cut(s) 371, 795, 1014, 1043
AoxI GGCC 4 cut(s) 404, 762, 792, 1139
ApeKI GCWGC 4 cut(s) 473, 539, 542, 925
ApoI RAATTY 3 cut(s) 121, 315, 828
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 1063
AsuII TTCGAA 1 cut(s) 965
AvaII GGWCC 1 cut(s) 1063
AxyI CCTNAGG 1 cut(s) 1103
BalI TGGCCA 1 cut(s) 764
BbvI GCAGC 4 cut(s) 460, 551, 554, 937
BccI CCATC 5 cut(s) 38, 203, 245, 403, 458
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 522, 590
BcoDI GTCTC 2 cut(s) 260, 330
BfaI CTAG 4 cut(s) 99, 216, 290, 690
BfmI CTRYAG 1 cut(s) 1058
BfrI CTTAAG 1 cut(s) 1082
BisI GCNGC 5 cut(s) 474, 540, 543, 926, 1079
BlsI GCNGC 5 cut(s) 475, 541, 544, 927, 1080
Bme1390I CCNGG 2 cut(s) 522, 590
Bme18I GGWCC 1 cut(s) 1063
BmgT120I GGNCC 1 cut(s) 1063
BmrFI CCNGG 2 cut(s) 522, 590
BmsI GCATC 3 cut(s) 559, 912, 1014
BpmI CTGGAG 3 cut(s) 421, 439, 611
Bpu14I TTCGAA 1 cut(s) 965
BpuEI CTTGAG 1 cut(s) 1040
Bsa29I ATCGAT 1 cut(s) 920
BsaI GGTCTC 2 cut(s) 260, 330
BsaJI CCNNGG 5 cut(s) 129, 521, 588, 783, 908
BsaWI WCCGGW 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 817
Bse1I ACTGG 1 cut(s) 456
Bse21I CCTNAGG 1 cut(s) 1103
BseBI CCWGG 2 cut(s) 522, 590
BseCI ATCGAT 1 cut(s) 920
BseDI CCNNGG 5 cut(s) 129, 521, 588, 783, 908
BseGI GGATG 4 cut(s) 49, 195, 936, 1137
BseLI CCNNNNNNNGG 1 cut(s) 817
BseMII CTCAG 4 cut(s) 281, 568, 743, 810
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 2 cut(s) 251, 612
BseXI GCAGC 4 cut(s) 460, 551, 554, 937
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 4 cut(s) 406, 764, 794, 1141
BshVI ATCGAT 1 cut(s) 920
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 817
BsmAI GTCTC 2 cut(s) 260, 330
BsnI GGCC 4 cut(s) 406, 764, 794, 1141
Bso31I GGTCTC 2 cut(s) 260, 330
Bsp119I TTCGAA 1 cut(s) 965
Bsp143I GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 5 cut(s) 340, 518, 928, 1066, 1079
BspANI GGCC 4 cut(s) 406, 764, 794, 1141
BspCNI CTCAG 4 cut(s) 280, 567, 742, 809
BspDI ATCGAT 1 cut(s) 920
BspPI GGATC 4 cut(s) 371, 795, 1014, 1043
BspT104I TTCGAA 1 cut(s) 965
BspTI CTTAAG 1 cut(s) 1082
BspTNI GGTCTC 2 cut(s) 260, 330
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 5 cut(s) 129, 521, 588, 783, 908
BssMI GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
BssT1I CCWWGG 2 cut(s) 783, 908
Bst2UI CCWGG 2 cut(s) 522, 590
Bst4CI ACNGT 2 cut(s) 424, 890
Bst6I CTCTTC 2 cut(s) 159, 685
BstAFI CTTAAG 1 cut(s) 1082
BstBI TTCGAA 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 5 cut(s) 267, 554, 729, 796, 1103
BstDSI CCRYGG 2 cut(s) 129, 783
BstF5I GGATG 4 cut(s) 49, 195, 936, 1137
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 6 cut(s) 87, 276, 379, 790, 1009, 1051
BstMAI GTCTC 2 cut(s) 260, 330
BstMBI GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 934, 956
BstNI CCWGG 2 cut(s) 522, 590
BstSCI CCNGG 2 cut(s) 520, 588
BstSFI CTRYAG 1 cut(s) 1058
BstV1I GCAGC 4 cut(s) 460, 551, 554, 937
BstX2I RGATCY 2 cut(s) 1006, 1048
BstXI CCANNNNNNTGG 2 cut(s) 202, 350
BstYI RGATCY 2 cut(s) 1006, 1048
Bsu15I ATCGAT 1 cut(s) 920
Bsu36I CCTNAGG 1 cut(s) 1103
BsuRI GGCC 4 cut(s) 406, 764, 794, 1141
BsuTUI ATCGAT 1 cut(s) 920
BtgI CCRYGG 2 cut(s) 129, 783
BtsCI GGATG 4 cut(s) 49, 195, 936, 1137
BtsI GCAGTG 2 cut(s) 654, 1048
BtsIMutI CAGTG 4 cut(s) 562, 654, 987, 1048
Cac8I GCNNGC 1 cut(s) 537
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 1063
ClaI ATCGAT 1 cut(s) 920
Csp6I GTAC 4 cut(s) 355, 420, 858, 893
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 4 cut(s) 344, 784, 833, 970
CviQI GTAC 4 cut(s) 355, 420, 858, 893
DdeI CTNAG 5 cut(s) 267, 554, 729, 796, 1103
DpnI GATC 6 cut(s) 86, 275, 378, 789, 1008, 1050
DpnII GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 159, 685
EarI CTCTTC 2 cut(s) 159, 685
EciI GGCGGA 2 cut(s) 329, 507
Eco130I CCWWGG 2 cut(s) 783, 908
Eco147I AGGCCT 2 cut(s) 794, 1141
Eco31I GGTCTC 2 cut(s) 260, 330
Eco47I GGWCC 1 cut(s) 1063
Eco81I CCTNAGG 1 cut(s) 1103
EcoRI GAATTC 1 cut(s) 828
EcoRII CCWGG 2 cut(s) 520, 588
EcoT14I CCWWGG 2 cut(s) 783, 908
ErhI CCWWGG 2 cut(s) 783, 908
FaeI CATG 4 cut(s) 347, 787, 836, 973
FaiI YATR 6 cut(s) 225, 345, 785, 834, 863, 971
FatI CATG 4 cut(s) 343, 783, 832, 969
FblI GTMKAC 2 cut(s) 11, 450
Fnu4HI GCNGC 5 cut(s) 474, 540, 543, 926, 1079
FokI GGATG 4 cut(s) 56, 182, 943, 1144
Fsp4HI GCNGC 5 cut(s) 474, 540, 543, 926, 1079
FspBI CTAG 4 cut(s) 99, 216, 290, 690
FspI TGCGCA 1 cut(s) 164
GlaI GCGC 1 cut(s) 164
GluI GCNGC 5 cut(s) 474, 540, 543, 926, 1079
GsuI CTGGAG 3 cut(s) 421, 439, 611
HaeIII GGCC 4 cut(s) 406, 764, 794, 1141
HapII CCGG 1 cut(s) 380
HhaI GCGC 1 cut(s) 165
Hin1II CATG 4 cut(s) 347, 787, 836, 973
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 5 cut(s) 265, 725, 740, 802, 899
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 4 cut(s) 12, 32, 451, 893
Hpy188I TCNGA 9 cut(s) 75, 235, 264, 270, 313, 330, 724, 799, 827
Hpy188III TCNNGA 5 cut(s) 88, 277, 400, 461, 1129
Hpy8I GTNNAC 4 cut(s) 12, 32, 451, 893
HpyAV CCTTC 3 cut(s) 574, 627, 696
HpyCH4III ACNGT 2 cut(s) 424, 890
HpyCH4V TGCA 5 cut(s) 539, 836, 925, 985, 1122
HpyF10VI GCNNNNNNNGC 2 cut(s) 934, 956
HpyF3I CTNAG 5 cut(s) 267, 554, 729, 796, 1103
Hsp92II CATG 4 cut(s) 347, 787, 836, 973
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 4 cut(s) 460, 551, 554, 937
LweI GCATC 3 cut(s) 559, 912, 1014
MaeI CTAG 4 cut(s) 99, 216, 290, 690
MaeIII GTNAC 1 cut(s) 651
MalI GATC 6 cut(s) 86, 275, 378, 789, 1008, 1050
MboI GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
MboII GAAGA 8 cut(s) 94, 146, 283, 672, 689, 985, 1058, 1120
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 2 cut(s) 1006, 1048
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 7 cut(s) 35, 121, 315, 434, 828, 986, 1088
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 764
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 108, 506, 885, 1083
MslI CAYNNNNRTG 2 cut(s) 348, 555
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 928
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 522, 590
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 2 cut(s) 522, 590
MwoI GCNNNNNNNGC 2 cut(s) 934, 956
NcoI CCATGG 1 cut(s) 783
NdeII GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
NlaIII CATG 4 cut(s) 347, 787, 836, 973
NsbI TGCGCA 1 cut(s) 164
NspV TTCGAA 1 cut(s) 965
PceI AGGCCT 2 cut(s) 794, 1141
PfeI GAWTC 4 cut(s) 725, 740, 802, 899
PkrI GCNGC 5 cut(s) 475, 541, 544, 927, 1080
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 520, 588
PspGI CCWGG 2 cut(s) 520, 588
PspPI GGNCC 1 cut(s) 1063
PsuI RGATCY 2 cut(s) 1006, 1048
RsaI GTAC 4 cut(s) 356, 421, 859, 894
RsaNI GTAC 4 cut(s) 355, 420, 858, 893
RseI CAYNNNNRTG 2 cut(s) 348, 555
SaqAI TTAA 4 cut(s) 108, 506, 885, 1083
SatI GCNGC 5 cut(s) 474, 540, 543, 926, 1079
Sau3AI GATC 6 cut(s) 84, 273, 376, 787, 1006, 1048
Sau96I GGNCC 1 cut(s) 1063
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 522, 590
SfaNI GCATC 3 cut(s) 559, 912, 1014
SfcI CTRYAG 1 cut(s) 1058
SfuI TTCGAA 1 cut(s) 965
SinI GGWCC 1 cut(s) 1063
SmiMI CAYNNNNRTG 2 cut(s) 348, 555
SmlI CTYRAG 2 cut(s) 1019, 1082
SmoI CTYRAG 2 cut(s) 1019, 1082
Sse9I AATT 7 cut(s) 35, 121, 315, 434, 828, 986, 1088
SseBI AGGCCT 2 cut(s) 794, 1141
SsiI CCGC 5 cut(s) 340, 518, 928, 1066, 1079
SspMI CTAG 4 cut(s) 99, 216, 290, 690
StuI AGGCCT 2 cut(s) 794, 1141
StyD4I CCNGG 2 cut(s) 520, 588
StyI CCWWGG 2 cut(s) 783, 908
TaaI ACNGT 2 cut(s) 424, 890
TaqI TCGA 4 cut(s) 16, 22, 920, 965
TasI AATT 7 cut(s) 35, 121, 315, 434, 828, 986, 1088
TauI GCSGC 1 cut(s) 1081
TfiI GAWTC 4 cut(s) 725, 740, 802, 899
Tru1I TTAA 4 cut(s) 108, 506, 885, 1083
Tru9I TTAA 4 cut(s) 108, 506, 885, 1083
TscAI CASTG 4 cut(s) 562, 654, 987, 1048
TseI GCWGC 4 cut(s) 473, 539, 542, 925
TspDTI ATGAA 6 cut(s) 198, 347, 821, 947, 986, 1008
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 4 cut(s) 562, 654, 987, 1048
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 1063
XapI RAATTY 3 cut(s) 121, 315, 828
XmiI GTMKAC 2 cut(s) 11, 450
XspI CTAG 4 cut(s) 99, 216, 290, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.