Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Reverse (-)

43880808 .. 43883396

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAAGGATTTCATCATCCAAGAAGCAAAAGCCGATGCCGATGACAGGTTTGGAGAAGACCCAAAAGCTTCTTTGTGGCGGCATCTTGCAGGAGCTATGGTCATACCCGAAGACAGTTGTACAAAAACACAAACCACAGGAGCTAATTGATCACCGTCTTGGCTTCGTGGCTGTTCGAATCCCCGATTCTCGTGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCGTATTGATGCCTTTGTGGCCGATGTCGGCTTACCTTCCAAAACGCTTTGTGGTATTACCCTCCCGGAGTTAAACAACGTGCAATGGCCAAGAATCTTGGTCAGGTCCGTGTCTCCTATTATTCCACCGAGTCCATTATGTCTTAAACAACTCAACAACAACAAAAGAGGTTCTCGCTTTCGCTATCCCTCAGTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTCGCTATCACTTGTGCAGTGAATAAAGCTAAGGAGCTCCGAATCAAGCGGTTAAGGGAACAGGCGCGTAAGGAAATTTTGAGGGTCAAGAGGCTGCTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.04

Weight (kDa)

10.88

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	530, 625
AciI	CCGC	3 cut(s)	123, 530, 607
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	2 cut(s)	318, 386
AcsI	RAATTY	1 cut(s)	633
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	89
AluBI	AGCT	5 cut(s)	112, 139, 187, 587, 595
AluI	AGCT	5 cut(s)	112, 139, 187, 587, 595
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	283, 417
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	4 cut(s)	249, 318, 386, 531
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	530, 625
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	53, 188
AsuII	TTCGAA	2 cut(s)	220, 245
AvaII	GGWCC	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	597
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	107, 161
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	639
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	283, 417
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	124, 531, 653
BlsI	GCNGC	3 cut(s)	125, 532, 654
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	3 cut(s)	69, 135, 298
BpiI	GAAGAC	2 cut(s)	107, 161
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	2 cut(s)	220, 245
BpuMI	CCSGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 282, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	40, 59
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	639
BsgI	GTGCAG	2 cut(s)	515, 594
Bsh1236I	CGCG	2 cut(s)	530, 625
BshFI	GGCC	4 cut(s)	251, 320, 388, 533
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	283, 417
BsnI	GGCC	4 cut(s)	251, 320, 388, 533
Bsp119I	TTCGAA	2 cut(s)	220, 245
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	193, 257
BspACI	CCGC	3 cut(s)	123, 530, 607
BspANI	GGCC	4 cut(s)	251, 320, 388, 533
BspCNI	CTCAG	1 cut(s)	503
BspFNI	CGCG	2 cut(s)	530, 625
BspPI	GGATC	1 cut(s)	265
BspT104I	TTCGAA	2 cut(s)	220, 245
BsrDI	GCAATG	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	163
BssMI	GATC	2 cut(s)	193, 257
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	160, 200, 269
Bst6I	CTCTTC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	163
BstBI	TTCGAA	2 cut(s)	220, 245
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	490, 588
BstF5I	GGATG	2 cut(s)	40, 59
BstFNI	CGCG	2 cut(s)	530, 625
BstHHI	GCGC	2 cut(s)	530, 625
BstKTI	GATC	2 cut(s)	196, 260
BstMAI	GTCTC	2 cut(s)	283, 417
BstMBI	GATC	2 cut(s)	193, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	363
BstUI	CGCG	2 cut(s)	530, 625
BstV1I	GCAGC	1 cut(s)	639
BstV2I	GAAGAC	2 cut(s)	107, 161
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	251, 320, 388, 533
BtsCI	GGATG	2 cut(s)	40, 59
BtsI	GCAGTG	2 cut(s)	503, 582
BtsIMutI	CAGTG	3 cut(s)	498, 503, 582
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	2 cut(s)	530, 625
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	164
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	490, 588
DpnI	GATC	2 cut(s)	195, 259
DpnII	GATC	2 cut(s)	193, 257
EaeI	YGGCCR	2 cut(s)	318, 386
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	597
FaiI	YATR	4 cut(s)	142, 148, 255, 439
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	124, 531, 653
FokI	GGATG	2 cut(s)	46, 47
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	3 cut(s)	124, 531, 653
GlaI	GCGC	2 cut(s)	529, 624
GluI	GCNGC	3 cut(s)	124, 531, 653
HaeIII	GGCC	4 cut(s)	251, 320, 388, 533
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	2 cut(s)	530, 625
Hin6I	GCGC	2 cut(s)	528, 623
HinP1I	GCGC	2 cut(s)	528, 623
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	7 cut(s)	11, 222, 230, 393, 430, 521, 600
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	2 cut(s)	53, 188
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	599
Hpy188III	TCNNGA	1 cut(s)	646
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	4 cut(s)	15, 241, 345, 540
HpyCH4III	ACNGT	3 cut(s)	160, 200, 269
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	4 cut(s)	133, 382, 496, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	490, 588
HpySE526I	ACGT	1 cut(s)	378
HspAI	GCGC	2 cut(s)	528, 623
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	193, 257
LmnI	GCTCC	4 cut(s)	136, 184, 592, 600
LpnPI	CCDG	6 cut(s)	75, 119, 167, 378, 388, 605
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	3 cut(s)	69, 135, 298
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	195, 259
MboI	GATC	2 cut(s)	193, 257
MboII	GAAGA	3 cut(s)	112, 166, 553
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	2 cut(s)	189, 633
MluNI	TGGCCA	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	7 cut(s)	25, 233, 371, 461, 499, 633, 642
Mox20I	TGGCCA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	3 cut(s)	371, 444, 611
Msp20I	TGGCCA	1 cut(s)	388
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	365
MvnI	CGCG	2 cut(s)	530, 625
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	193, 257
NmuCI	GTSAC	1 cut(s)	41
NspV	TTCGAA	2 cut(s)	220, 245
PceI	AGGCCT	1 cut(s)	251
PfeI	GAWTC	6 cut(s)	11, 222, 230, 393, 521, 600
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	125, 532, 654
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	371, 444, 611
SatI	GCNGC	3 cut(s)	124, 531, 653
Sau3AI	GATC	2 cut(s)	193, 257
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	597
SfaNI	GCATC	3 cut(s)	69, 135, 298
SfuI	TTCGAA	2 cut(s)	220, 245
SinI	GGWCC	1 cut(s)	405
Sse9I	AATT	2 cut(s)	189, 633
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	3 cut(s)	123, 530, 607
SstI	GAGCTC	1 cut(s)	597
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	160, 200, 269
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	2 cut(s)	220, 245
TasI	AATT	2 cut(s)	189, 633
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	2 cut(s)	126, 533
TfiI	GAWTC	6 cut(s)	11, 222, 230, 393, 521, 600
Tru1I	TTAA	3 cut(s)	371, 444, 611
Tru9I	TTAA	3 cut(s)	371, 444, 611
TscAI	CASTG	3 cut(s)	498, 503, 582
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	652
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	290, 397
TspRI	CASTG	3 cut(s)	498, 503, 582
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.