Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000736

Physical Location & Seq

Genomic Coordinates Reverse (-)

57240783 .. 57243285

Gene Structure 2503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG382300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTTGCGATTCTAAAAGAAGGCGTAGAGAGGATGTGGGTGACACAACGATTTCATCATCCAAGAAGCAAAAGCTGATGCCGATGACAGGTTTGGAGCAGACCCAAAAGCTTCTTTGTTGCGGGATCTTGCAGGAGCTAATTGATCACCGTCATGGCTCTGTGGCTGTTCGAATCCCTGATTCTCAGGAGGTTCGAAGGCCTATGGATCTGTCCACCGTCAAATCCAAGTTGGAGAGAGACAACTACTCCAGTATTGATGCCTTTGTGGCCGATGTCAGGCTTACCTTCCTAAACTCGTTATGGTATTACCCTCATGGAGATAAACAGCGTGCAATGGCCAAGAATCTTGGTCAGGTTTTTGAGGCTAAGTGGAAATTACGGTTTCCTGAAACTAGGTCTTCAACCTTGAAAGCTTCTTGTTCTAGTTTGGATAGGTCTGTGTCTCCTATTAGTCCAGTGAGTCCATTAAGTCTTCAACAACTCAACAACAAAAAAAGAGAGGCCAAGAGGTCATCCAGAAACCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGGATAAAGATAAGGAACACCGAATCAAGCGCGGCCTTGACGAAGAGAAGGGTTCTGCTTCTGCTATCACTTGTGCAGTGAATAAATATAAGGAGCACCGAATCAAACGGCTAAGGGAACAGGCTCGTAAGGAAATTTTGAGGGTTGAAGAGGCTGCTCGATTGAAAGTCGAGAATCCTTTACAAGATCTTCAACAACTCAAGTTGTTGTGCAGTGGTGGCATCAAACAGGATTCTTGTTACAGGGTGTATCGTTGGTTGACACTTGAGAAGTTGGGCATCTATTTGAAGAGGGACGAACTTGAAGATGTTGATGATGAGGATGAATTTCGCATTGGAGATTGGGAAGAAGGTGAAATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

310

Amino Acids

35.64

Weight (kDa)

9.06

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	63 - 114	6e-10	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1307600.v1.1 MD09G1193700.v1.1 MD09G1193800.v1.1
prunus_persica	Prupe.3G132800_v2.0.a1 Prupe.4G209900_v2.0.a1 Prupe.4G212600_v2.0.a1 Prupe.8G049700_v2.0.a1 Prupe.8G049900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G050900_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051100_v2.0.a1 Prupe.8G051500_v2.0.a1 Prupe.8G051500_v2.0.a1
pyrus_communis	pycom09g11030 pycom12g22640
rosa_chinensis	RchiOBHm_Chr2g0143821 RchiOBHm_Chr2g0143931
rosa_laevigata	RLG00000019465
rosa_multiflora	Rmu_sc0001321.1_g000002 Rmu_sc0004897.1_g000002 Rmu_sc0006379.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116640 Rroxscaffold_2G00116660
rosa_rugosa	Rorug01G0033800 Rorug01G0033800 Rorug01G0033800 Rorug01G0041200 Rorug02G0253800 Rorug02G0253800 Rorug02G0253900 Rorug02G0254000 Rorug02G0254000 Rorug02G0254000 Rorug02G0254100 Rorug02G0254200 Rorug02G0254200 Rorug02G0254300 Rorug02G0254400
rosa_samantha	Rh1BG044300 Rh1BG049800 Rh2AG376000 Rh2AG382300 Rh2BG382100 Rh2BG445500 Rh2BG445800 Rh2BG446800 Rh2BG447100 Rh2BG447200 Rh2BG447500 Rh2BG447700 Rh2BG447900 Rh2BG448200 Rh2BG452900 Rh2CG360800 Rh2DG398400 Rh2DG455800 Rh2DG456000 Rh2DG457200 Rh2DG457400 Rh2DG457500 Rh2DG457700 Rh2DG458100 Rh2DG462800
rosa_wichuraiana	Rw2G033300 Rw2G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	600
AciI	CCGC	2 cut(s)	123, 600
AclWI	GGATC	2 cut(s)	134, 216
AcoI	YGGCCR	2 cut(s)	270, 339
AcsI	RAATTY	2 cut(s)	702, 893
AfiI	CCNNNNNNNGG	2 cut(s)	89, 279
AgsI	TTSAA	8 cut(s)	405, 412, 479, 716, 733, 761, 856, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	4 cut(s)	76, 112, 139, 416
AluI	AGCT	4 cut(s)	76, 112, 139, 416
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	234, 450
AlwI	GGATC	2 cut(s)	134, 216
AoxI	GGCC	5 cut(s)	200, 270, 339, 504, 601
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	702, 893
AspLEI	GCGC	1 cut(s)	600
AsuHPI	GGTGA	3 cut(s)	53, 140, 932
AsuII	TTCGAA	2 cut(s)	172, 196
BalI	TGGCCA	1 cut(s)	341
BbsI	GAAGAC	2 cut(s)	393, 467
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	709
BceAI	ACGGC	1 cut(s)	692
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	234, 450
BfaI	CTAG	2 cut(s)	396, 426
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	2 cut(s)	601, 723
BlsI	GCNGC	2 cut(s)	602, 724
BmsI	GCATC	4 cut(s)	69, 250, 798, 855
BpiI	GAAGAC	2 cut(s)	393, 467
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	680
Bpu14I	TTCGAA	2 cut(s)	172, 196
BpuEI	CTTGAG	2 cut(s)	752, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 279
Bse1I	ACTGG	2 cut(s)	252, 458
Bse3DI	GCAATG	1 cut(s)	342
BseGI	GGATG	4 cut(s)	40, 59, 515, 895
BseLI	CCNNNNNNNGG	2 cut(s)	89, 279
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	252, 458
BseXI	GCAGC	1 cut(s)	709
BsgI	GTGCAG	3 cut(s)	585, 663, 799
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	5 cut(s)	202, 272, 341, 506, 603
BsiHKAI	GWGCWC	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	89, 279
BsmAI	GTCTC	2 cut(s)	234, 450
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	5 cut(s)	202, 272, 341, 506, 603
Bsp119I	TTCGAA	2 cut(s)	172, 196
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	4 cut(s)	126, 145, 208, 754
BspACI	CCGC	2 cut(s)	123, 600
BspANI	GGCC	5 cut(s)	202, 272, 341, 506, 603
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	600
BspPI	GGATC	2 cut(s)	134, 216
BspT104I	TTCGAA	2 cut(s)	172, 196
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	252, 458
BssMI	GATC	4 cut(s)	126, 145, 208, 754
Bst4CI	ACNGT	3 cut(s)	152, 220, 384
Bst6I	CTCTTC	4 cut(s)	528, 606, 711, 851
BstBI	TTCGAA	2 cut(s)	172, 196
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	186, 369, 680
BstF5I	GGATG	4 cut(s)	40, 59, 515, 895
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	4 cut(s)	129, 148, 211, 757
BstMAI	GTCTC	2 cut(s)	234, 450
BstMBI	GATC	4 cut(s)	126, 145, 208, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 786
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	2 cut(s)	393, 467
BstX2I	RGATCY	3 cut(s)	126, 208, 754
BstYI	RGATCY	3 cut(s)	126, 208, 754
BsuRI	GGCC	5 cut(s)	202, 272, 341, 506, 603
BtsCI	GGATG	4 cut(s)	40, 59, 515, 895
BtsI	GCAGTG	3 cut(s)	573, 651, 787
BtsIMutI	CAGTG	4 cut(s)	465, 573, 651, 787
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	600
CviAII	CATG	2 cut(s)	155, 317
DdeI	CTNAG	3 cut(s)	186, 369, 680
DpnI	GATC	4 cut(s)	128, 147, 210, 756
DpnII	GATC	4 cut(s)	126, 145, 208, 754
EaeI	YGGCCR	2 cut(s)	270, 339
Eam1104I	CTCTTC	4 cut(s)	528, 606, 711, 851
EarI	CTCTTC	4 cut(s)	528, 606, 711, 851
Eco147I	AGGCCT	1 cut(s)	202
FaeI	CATG	2 cut(s)	158, 320
FaiI	YATR	5 cut(s)	156, 206, 304, 318, 657
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	2 cut(s)	154, 316
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	601, 723
FokI	GGATG	4 cut(s)	46, 47, 502, 902
Fsp4HI	GCNGC	2 cut(s)	601, 723
FspBI	CTAG	2 cut(s)	396, 426
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	2 cut(s)	601, 723
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	5 cut(s)	202, 272, 341, 506, 603
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	2 cut(s)	158, 320
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HindIII	AAGCTT	2 cut(s)	110, 414
HinfI	GANTC	9 cut(s)	11, 174, 182, 346, 463, 591, 669, 742, 800
HphI	GGTGA	3 cut(s)	53, 140, 932
Hpy166II	GTNNAC	2 cut(s)	216, 828
Hpy188III	TCNNGA	4 cut(s)	188, 389, 519, 739
Hpy8I	GTNNAC	2 cut(s)	216, 828
HpyAV	CCTTC	6 cut(s)	15, 192, 298, 532, 610, 911
HpyCH4III	ACNGT	3 cut(s)	152, 220, 384
HpyCH4V	TGCA	5 cut(s)	133, 335, 566, 644, 780
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 786
HpyF3I	CTNAG	3 cut(s)	186, 369, 680
Hsp92II	CATG	2 cut(s)	158, 320
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	126, 145, 208, 754
LmnI	GCTCC	3 cut(s)	97, 136, 661
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	4 cut(s)	69, 250, 798, 855
MaeI	CTAG	2 cut(s)	396, 426
MaeIII	GTNAC	2 cut(s)	41, 806
MalI	GATC	4 cut(s)	128, 147, 210, 756
MboI	GATC	4 cut(s)	126, 145, 208, 754
MboII	GAAGA	9 cut(s)	393, 467, 545, 623, 728, 749, 868, 884, 926
MflI	RGATCY	3 cut(s)	126, 208, 754
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	141, 377, 702, 893
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	341
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	269, 786
NdeII	GATC	4 cut(s)	126, 145, 208, 754
NlaIII	CATG	2 cut(s)	158, 320
NmuCI	GTSAC	1 cut(s)	41
NspV	TTCGAA	2 cut(s)	172, 196
PceI	AGGCCT	1 cut(s)	202
PfeI	GAWTC	8 cut(s)	11, 174, 182, 346, 591, 669, 742, 800
PkrI	GCNGC	2 cut(s)	602, 724
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
PsuI	RGATCY	3 cut(s)	126, 208, 754
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	2 cut(s)	601, 723
Sau3AI	GATC	4 cut(s)	126, 145, 208, 754
SchI	GAGTC	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	4 cut(s)	69, 250, 798, 855
SfuI	TTCGAA	2 cut(s)	172, 196
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	767, 833
SmoI	CTYRAG	2 cut(s)	767, 833
Sse9I	AATT	4 cut(s)	141, 377, 702, 893
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	123, 600
SspMI	CTAG	2 cut(s)	396, 426
StuI	AGGCCT	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	152, 220, 384
TaqI	TCGA	4 cut(s)	172, 196, 727, 738
TasI	AATT	4 cut(s)	141, 377, 702, 893
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	8 cut(s)	11, 174, 182, 346, 591, 669, 742, 800
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	4 cut(s)	465, 573, 651, 787
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	45, 906
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	4 cut(s)	465, 573, 651, 787
XapI	RAATTY	2 cut(s)	702, 893
XspI	CTAG	2 cut(s)	396, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.